Hb_007305_040

Information

Type -
Description -
Location Contig7305: 46596-51832
Sequence    

Annotation

kegg
ID rcu:RCOM_1315270
description Nodulin-26, putative
nr
ID XP_002518973.1
description Nodulin-26, putative [Ricinus communis]
swissprot
ID Q9SV84
description Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1
trembl
ID B9RZ04
description Nodulin-26, putative OS=Ricinus communis GN=RCOM_1315270 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable aquaporin nip5-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55953: 45971-46223 , PASA_asmbl_55954: 46551-51786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007305_040 0.0 - - Nodulin-26, putative [Ricinus communis]
2 Hb_000625_040 0.0776995432 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
3 Hb_002236_020 0.089915764 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
4 Hb_000347_370 0.1007817344 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
5 Hb_024857_010 0.1016863385 - - glutaredoxin 2.1 [Hevea brasiliensis]
6 Hb_004531_010 0.1070616513 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
7 Hb_000260_130 0.113348503 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
8 Hb_001168_100 0.1159812505 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
9 Hb_007383_050 0.1173695629 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
10 Hb_004122_020 0.126519865 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
11 Hb_001411_150 0.1312990259 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
12 Hb_011928_030 0.1339485634 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
13 Hb_004267_070 0.1360260077 - - latex allene oxide synthase [Hevea brasiliensis]
14 Hb_000252_190 0.1367333664 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
15 Hb_000656_370 0.1400662865 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_001529_020 0.1407217524 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000398_200 0.1412279411 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
18 Hb_010417_120 0.1437395493 - - conserved hypothetical protein [Ricinus communis]
19 Hb_166155_010 0.144368994 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
20 Hb_000123_310 0.1488821399 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]

Gene co-expression network

sample Hb_007305_040 Hb_007305_040 Hb_000625_040 Hb_000625_040 Hb_007305_040--Hb_000625_040 Hb_002236_020 Hb_002236_020 Hb_007305_040--Hb_002236_020 Hb_000347_370 Hb_000347_370 Hb_007305_040--Hb_000347_370 Hb_024857_010 Hb_024857_010 Hb_007305_040--Hb_024857_010 Hb_004531_010 Hb_004531_010 Hb_007305_040--Hb_004531_010 Hb_000260_130 Hb_000260_130 Hb_007305_040--Hb_000260_130 Hb_003376_150 Hb_003376_150 Hb_000625_040--Hb_003376_150 Hb_166155_010 Hb_166155_010 Hb_000625_040--Hb_166155_010 Hb_002890_060 Hb_002890_060 Hb_000625_040--Hb_002890_060 Hb_000123_310 Hb_000123_310 Hb_000625_040--Hb_000123_310 Hb_004122_020 Hb_004122_020 Hb_000625_040--Hb_004122_020 Hb_002236_020--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_002236_020--Hb_000656_370 Hb_000252_190 Hb_000252_190 Hb_002236_020--Hb_000252_190 Hb_002236_020--Hb_004122_020 Hb_002968_010 Hb_002968_010 Hb_002236_020--Hb_002968_010 Hb_001168_100 Hb_001168_100 Hb_000347_370--Hb_001168_100 Hb_004267_070 Hb_004267_070 Hb_000347_370--Hb_004267_070 Hb_007383_050 Hb_007383_050 Hb_000347_370--Hb_007383_050 Hb_011928_030 Hb_011928_030 Hb_000347_370--Hb_011928_030 Hb_133646_010 Hb_133646_010 Hb_000347_370--Hb_133646_010 Hb_087468_010 Hb_087468_010 Hb_024857_010--Hb_087468_010 Hb_024857_010--Hb_000656_370 Hb_024857_010--Hb_000252_190 Hb_002239_030 Hb_002239_030 Hb_024857_010--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_024857_010--Hb_000101_140 Hb_004531_010--Hb_000347_370 Hb_004531_010--Hb_004267_070 Hb_004531_010--Hb_007383_050 Hb_001411_150 Hb_001411_150 Hb_004531_010--Hb_001411_150 Hb_000210_150 Hb_000210_150 Hb_004531_010--Hb_000210_150 Hb_005714_140 Hb_005714_140 Hb_000260_130--Hb_005714_140 Hb_161045_010 Hb_161045_010 Hb_000260_130--Hb_161045_010 Hb_002267_030 Hb_002267_030 Hb_000260_130--Hb_002267_030 Hb_004242_160 Hb_004242_160 Hb_000260_130--Hb_004242_160 Hb_001511_270 Hb_001511_270 Hb_000260_130--Hb_001511_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136057 272.672 14.4541 69.148 0.0638565 0.139061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.077805 0 0 21.133 14.0234

CAGE analysis