Hb_007313_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig7313: 90529-91773
Sequence    

Annotation

kegg
ID rcu:RCOM_0768900
description Disease resistance protein RPS2, putative
nr
ID XP_002531643.1
description Disease resistance protein RPS2, putative [Ricinus communis]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID B9T074
description Disease resistance protein RPS2, putative OS=Ricinus communis GN=RCOM_0768900 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_100 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
2 Hb_137276_010 0.1017257984 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_011931_060 0.1272664072 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
4 Hb_003058_020 0.1302664045 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
5 Hb_007313_110 0.1355023977 - - phosphoprotein phosphatase, putative [Ricinus communis]
6 Hb_143629_060 0.1362097434 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
7 Hb_004987_070 0.1368527279 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
8 Hb_000599_230 0.1386694472 - - -
9 Hb_000084_280 0.139388634 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_002276_070 0.146553717 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
11 Hb_008092_060 0.1542114732 - - -
12 Hb_012165_020 0.1548203065 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
13 Hb_005470_020 0.155437485 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
14 Hb_003388_030 0.156359302 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
15 Hb_000479_170 0.1579007977 - - chaperone clpb, putative [Ricinus communis]
16 Hb_005288_110 0.1586631972 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
17 Hb_025477_050 0.1619215319 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_002368_070 0.1631984831 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
19 Hb_009252_040 0.1656093458 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
20 Hb_008123_010 0.1662546111 - - -

Gene co-expression network

sample Hb_007313_100 Hb_007313_100 Hb_137276_010 Hb_137276_010 Hb_007313_100--Hb_137276_010 Hb_011931_060 Hb_011931_060 Hb_007313_100--Hb_011931_060 Hb_003058_020 Hb_003058_020 Hb_007313_100--Hb_003058_020 Hb_007313_110 Hb_007313_110 Hb_007313_100--Hb_007313_110 Hb_143629_060 Hb_143629_060 Hb_007313_100--Hb_143629_060 Hb_004987_070 Hb_004987_070 Hb_007313_100--Hb_004987_070 Hb_137276_010--Hb_011931_060 Hb_004545_170 Hb_004545_170 Hb_137276_010--Hb_004545_170 Hb_137276_010--Hb_003058_020 Hb_022250_100 Hb_022250_100 Hb_137276_010--Hb_022250_100 Hb_002092_110 Hb_002092_110 Hb_137276_010--Hb_002092_110 Hb_000479_170 Hb_000479_170 Hb_011931_060--Hb_000479_170 Hb_000816_100 Hb_000816_100 Hb_011931_060--Hb_000816_100 Hb_002368_070 Hb_002368_070 Hb_011931_060--Hb_002368_070 Hb_000958_070 Hb_000958_070 Hb_011931_060--Hb_000958_070 Hb_000331_560 Hb_000331_560 Hb_011931_060--Hb_000331_560 Hb_000033_110 Hb_000033_110 Hb_011931_060--Hb_000033_110 Hb_003058_020--Hb_004987_070 Hb_000015_100 Hb_000015_100 Hb_003058_020--Hb_000015_100 Hb_048141_020 Hb_048141_020 Hb_003058_020--Hb_048141_020 Hb_003058_020--Hb_011931_060 Hb_006618_050 Hb_006618_050 Hb_003058_020--Hb_006618_050 Hb_007035_040 Hb_007035_040 Hb_003058_020--Hb_007035_040 Hb_000331_130 Hb_000331_130 Hb_007313_110--Hb_000331_130 Hb_031284_070 Hb_031284_070 Hb_007313_110--Hb_031284_070 Hb_007313_110--Hb_007035_040 Hb_003124_100 Hb_003124_100 Hb_007313_110--Hb_003124_100 Hb_080952_050 Hb_080952_050 Hb_007313_110--Hb_080952_050 Hb_000084_280 Hb_000084_280 Hb_143629_060--Hb_000084_280 Hb_002276_070 Hb_002276_070 Hb_143629_060--Hb_002276_070 Hb_004738_110 Hb_004738_110 Hb_143629_060--Hb_004738_110 Hb_008092_060 Hb_008092_060 Hb_143629_060--Hb_008092_060 Hb_002053_110 Hb_002053_110 Hb_143629_060--Hb_002053_110 Hb_004987_070--Hb_000015_100 Hb_003388_030 Hb_003388_030 Hb_004987_070--Hb_003388_030 Hb_000384_080 Hb_000384_080 Hb_004987_070--Hb_000384_080 Hb_005470_020 Hb_005470_020 Hb_004987_070--Hb_005470_020 Hb_000780_190 Hb_000780_190 Hb_004987_070--Hb_000780_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24999 0.907399 1.6625 1.50592 2.40863 2.36758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20368 0.24435 0.227697 1.54064 5.57382

CAGE analysis