Hb_007313_110

Information

Type -
Description -
Location Contig7313: 91846-93051
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512305.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID Q9V780
description Protein lap1 OS=Drosophila melanogaster GN=Lap1 PE=2 SV=1
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_110 0.0 - - phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_007313_100 0.1355023977 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
3 Hb_000331_130 0.1489570971 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
4 Hb_031284_070 0.1585368569 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
5 Hb_007035_040 0.1588989446 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
6 Hb_003124_100 0.1608104878 - - -
7 Hb_080952_050 0.1612113718 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nelumbo nucifera]
8 Hb_009252_040 0.1620907228 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
9 Hb_008206_060 0.1636715131 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_025477_050 0.1643999532 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_002304_060 0.1672027421 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
12 Hb_001541_100 0.1679451821 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
13 Hb_003462_070 0.1684486004 - - arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_000820_150 0.1695001762 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
15 Hb_004884_180 0.1715139195 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
16 Hb_004724_460 0.1716233268 - - hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
17 Hb_002997_070 0.1719317836 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
18 Hb_003398_100 0.1721567614 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001789_020 0.1735158401 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
20 Hb_000320_470 0.1737745206 - - calcium-dependent protein kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_007313_110 Hb_007313_110 Hb_007313_100 Hb_007313_100 Hb_007313_110--Hb_007313_100 Hb_000331_130 Hb_000331_130 Hb_007313_110--Hb_000331_130 Hb_031284_070 Hb_031284_070 Hb_007313_110--Hb_031284_070 Hb_007035_040 Hb_007035_040 Hb_007313_110--Hb_007035_040 Hb_003124_100 Hb_003124_100 Hb_007313_110--Hb_003124_100 Hb_080952_050 Hb_080952_050 Hb_007313_110--Hb_080952_050 Hb_137276_010 Hb_137276_010 Hb_007313_100--Hb_137276_010 Hb_011931_060 Hb_011931_060 Hb_007313_100--Hb_011931_060 Hb_003058_020 Hb_003058_020 Hb_007313_100--Hb_003058_020 Hb_143629_060 Hb_143629_060 Hb_007313_100--Hb_143629_060 Hb_004987_070 Hb_004987_070 Hb_007313_100--Hb_004987_070 Hb_001662_140 Hb_001662_140 Hb_000331_130--Hb_001662_140 Hb_001660_120 Hb_001660_120 Hb_000331_130--Hb_001660_120 Hb_000331_130--Hb_007035_040 Hb_004884_180 Hb_004884_180 Hb_000331_130--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_000331_130--Hb_000363_060 Hb_002233_130 Hb_002233_130 Hb_000331_130--Hb_002233_130 Hb_000948_170 Hb_000948_170 Hb_031284_070--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_031284_070--Hb_000627_250 Hb_021346_030 Hb_021346_030 Hb_031284_070--Hb_021346_030 Hb_031284_070--Hb_001660_120 Hb_000740_050 Hb_000740_050 Hb_031284_070--Hb_000740_050 Hb_001205_300 Hb_001205_300 Hb_031284_070--Hb_001205_300 Hb_000245_150 Hb_000245_150 Hb_007035_040--Hb_000245_150 Hb_000320_470 Hb_000320_470 Hb_007035_040--Hb_000320_470 Hb_007035_040--Hb_002233_130 Hb_007035_040--Hb_004884_180 Hb_001008_050 Hb_001008_050 Hb_007035_040--Hb_001008_050 Hb_000925_090 Hb_000925_090 Hb_003124_100--Hb_000925_090 Hb_009252_040 Hb_009252_040 Hb_003124_100--Hb_009252_040 Hb_143489_010 Hb_143489_010 Hb_003124_100--Hb_143489_010 Hb_003124_100--Hb_000320_470 Hb_002600_060 Hb_002600_060 Hb_003124_100--Hb_002600_060 Hb_003506_050 Hb_003506_050 Hb_003124_100--Hb_003506_050 Hb_080952_050--Hb_009252_040 Hb_000731_010 Hb_000731_010 Hb_080952_050--Hb_000731_010 Hb_080952_050--Hb_003124_100 Hb_001832_040 Hb_001832_040 Hb_080952_050--Hb_001832_040 Hb_004466_050 Hb_004466_050 Hb_080952_050--Hb_004466_050 Hb_002986_070 Hb_002986_070 Hb_080952_050--Hb_002986_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05327 2.10223 4.05276 1.96497 2.02145 3.45622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86337 0.507579 0.236119 3.21487 7.09259

CAGE analysis