Hb_007317_010

Information

Type -
Description -
Location Contig7317: 12987-14246
Sequence    

Annotation

kegg
ID rcu:RCOM_1280910
description hypothetical protein
nr
ID XP_002523797.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZW88
description F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1
trembl
ID B9SCS8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1280910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56039: 13548-13913 , PASA_asmbl_56040: 14994-15249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_022250_060 0.0525013925 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
3 Hb_000926_090 0.0715685968 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
4 Hb_002217_020 0.0844183403 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
5 Hb_000221_190 0.0911312051 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
6 Hb_010578_080 0.0914515437 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
7 Hb_002754_010 0.0920500448 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
8 Hb_005867_090 0.0921548132 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
9 Hb_164010_040 0.0931327498 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_062226_130 0.0955636101 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
11 Hb_000393_020 0.0961994361 - - lipid binding protein, putative [Ricinus communis]
12 Hb_000890_150 0.0981801484 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
13 Hb_001300_150 0.0982760404 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
14 Hb_005245_100 0.0983377626 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
15 Hb_154471_020 0.1004745802 - - squalene synthetase [Euphorbia tirucalli]
16 Hb_000733_200 0.1008542879 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
17 Hb_086639_010 0.1012976667 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_004162_130 0.1025041724 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003304_020 0.1025731286 - - Polyadenylate-binding protein RBP47C [Glycine soja]
20 Hb_000484_130 0.1035081113 - - splicing factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007317_010 Hb_007317_010 Hb_022250_060 Hb_022250_060 Hb_007317_010--Hb_022250_060 Hb_000926_090 Hb_000926_090 Hb_007317_010--Hb_000926_090 Hb_002217_020 Hb_002217_020 Hb_007317_010--Hb_002217_020 Hb_000221_190 Hb_000221_190 Hb_007317_010--Hb_000221_190 Hb_010578_080 Hb_010578_080 Hb_007317_010--Hb_010578_080 Hb_002754_010 Hb_002754_010 Hb_007317_010--Hb_002754_010 Hb_022250_060--Hb_000221_190 Hb_022250_060--Hb_000926_090 Hb_004162_130 Hb_004162_130 Hb_022250_060--Hb_004162_130 Hb_022250_060--Hb_002217_020 Hb_000393_020 Hb_000393_020 Hb_022250_060--Hb_000393_020 Hb_000926_090--Hb_002754_010 Hb_022256_020 Hb_022256_020 Hb_000926_090--Hb_022256_020 Hb_000484_130 Hb_000484_130 Hb_000926_090--Hb_000484_130 Hb_164010_040 Hb_164010_040 Hb_000926_090--Hb_164010_040 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_136509_010 Hb_136509_010 Hb_002217_020--Hb_136509_010 Hb_001856_200 Hb_001856_200 Hb_002217_020--Hb_001856_200 Hb_000164_020 Hb_000164_020 Hb_002217_020--Hb_000164_020 Hb_003582_060 Hb_003582_060 Hb_000221_190--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000221_190--Hb_012022_040 Hb_000310_020 Hb_000310_020 Hb_000221_190--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000221_190--Hb_000505_130 Hb_006615_240 Hb_006615_240 Hb_000221_190--Hb_006615_240 Hb_001278_100 Hb_001278_100 Hb_000221_190--Hb_001278_100 Hb_062226_130 Hb_062226_130 Hb_010578_080--Hb_062226_130 Hb_009296_070 Hb_009296_070 Hb_010578_080--Hb_009296_070 Hb_004712_210 Hb_004712_210 Hb_010578_080--Hb_004712_210 Hb_000392_420 Hb_000392_420 Hb_010578_080--Hb_000392_420 Hb_002534_100 Hb_002534_100 Hb_010578_080--Hb_002534_100 Hb_000365_230 Hb_000365_230 Hb_010578_080--Hb_000365_230 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08176 2.50533 2.9054 2.8226 0.85139 1.39213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10542 3.07152 3.65001 2.10916 1.43716

CAGE analysis