Hb_007317_060

Information

Type -
Description -
Location Contig7317: 38753-40534
Sequence    

Annotation

kegg
ID rcu:RCOM_1281610
description 60S ribosomal protein L10a, putative
nr
ID ADR71272.1
description 60S ribosomal protein L10aB [Hevea brasiliensis]
swissprot
ID Q8VZB9
description 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1
trembl
ID I3NMN5
description Ribosomal protein OS=Hevea brasiliensis GN=RPL10aB PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l10a-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56047: 38184-40798
cDNA
(Sanger)
(ID:Location)		 028_L09.ab1: 38189-40293 , 048_C19.ab1: 38184-40597 , 052_G04.ab1: 38184-40563

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_060 0.0 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
2 Hb_000380_010 0.0780941644 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
3 Hb_002259_150 0.0801520163 - - BnaC04g40780D [Brassica napus]
4 Hb_008173_120 0.0851118441 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000684_230 0.0889740748 - - 40S ribosomal protein S23, putative [Ricinus communis]
6 Hb_000648_030 0.0946574085 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
7 Hb_003687_020 0.0971648847 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
8 Hb_004007_100 0.1034630442 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
9 Hb_000144_090 0.1034665399 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
10 Hb_002539_090 0.1056709054 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
11 Hb_004453_150 0.1057824448 - - BnaC02g13240D [Brassica napus]
12 Hb_000787_140 0.1086830072 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
13 Hb_000193_350 0.1093836112 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
14 Hb_023226_010 0.1108850952 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
15 Hb_002701_050 0.1112812411 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
16 Hb_000087_020 0.1113943042 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
17 Hb_000751_130 0.1118198963 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
18 Hb_100777_010 0.1125100127 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
19 Hb_000003_730 0.1128466988 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
20 Hb_005400_030 0.1143488193 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]

Gene co-expression network

sample Hb_007317_060 Hb_007317_060 Hb_000380_010 Hb_000380_010 Hb_007317_060--Hb_000380_010 Hb_002259_150 Hb_002259_150 Hb_007317_060--Hb_002259_150 Hb_008173_120 Hb_008173_120 Hb_007317_060--Hb_008173_120 Hb_000684_230 Hb_000684_230 Hb_007317_060--Hb_000684_230 Hb_000648_030 Hb_000648_030 Hb_007317_060--Hb_000648_030 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020 Hb_000380_010--Hb_008173_120 Hb_005117_010 Hb_005117_010 Hb_000380_010--Hb_005117_010 Hb_015057_010 Hb_015057_010 Hb_000380_010--Hb_015057_010 Hb_009543_030 Hb_009543_030 Hb_000380_010--Hb_009543_030 Hb_007012_020 Hb_007012_020 Hb_000380_010--Hb_007012_020 Hb_002272_260 Hb_002272_260 Hb_002259_150--Hb_002272_260 Hb_102156_010 Hb_102156_010 Hb_002259_150--Hb_102156_010 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_004453_150 Hb_004453_150 Hb_002259_150--Hb_004453_150 Hb_000193_350 Hb_000193_350 Hb_002259_150--Hb_000193_350 Hb_008173_120--Hb_000684_230 Hb_000230_540 Hb_000230_540 Hb_008173_120--Hb_000230_540 Hb_007193_100 Hb_007193_100 Hb_008173_120--Hb_007193_100 Hb_004007_100 Hb_004007_100 Hb_008173_120--Hb_004007_100 Hb_000103_140 Hb_000103_140 Hb_008173_120--Hb_000103_140 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_000003_730 Hb_000003_730 Hb_000684_230--Hb_000003_730 Hb_000684_230--Hb_000103_140 Hb_067776_010 Hb_067776_010 Hb_000648_030--Hb_067776_010 Hb_000648_030--Hb_000380_010 Hb_000493_010 Hb_000493_010 Hb_000648_030--Hb_000493_010 Hb_012675_070 Hb_012675_070 Hb_000648_030--Hb_012675_070 Hb_000648_030--Hb_002259_150 Hb_003687_020--Hb_000193_350 Hb_025193_050 Hb_025193_050 Hb_003687_020--Hb_025193_050 Hb_005224_050 Hb_005224_050 Hb_003687_020--Hb_005224_050 Hb_003687_020--Hb_002259_150 Hb_003687_020--Hb_000684_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.375 27.3983 39.4564 143.039 128.852 540.467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
325.236 431.302 256.733 122.613 45.771

CAGE analysis