Hb_007317_080

Information

Type -
Description -
Location Contig7317: 61083-61535
Sequence    

Annotation

kegg
ID rcu:RCOM_1281630
description Ferredoxin-3, chloroplast precursor, putative
nr
ID XP_012084582.1
description PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
swissprot
ID Q9ZQG8
description Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1
trembl
ID A0A067K6F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20218 PE=4 SV=1
Gene Ontology
ID GO:0009055
description root r-b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_080 0.0 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
2 Hb_002374_380 0.1873567911 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
3 Hb_000694_060 0.1926866872 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
4 Hb_021888_120 0.2019148531 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
5 Hb_000270_740 0.221054032 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
6 Hb_017170_030 0.2228511451 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
7 Hb_001675_030 0.2251989859 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006420_090 0.2284414998 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
9 Hb_000868_100 0.2288744633 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
10 Hb_140049_010 0.2292955583 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
11 Hb_001449_100 0.2327982808 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
12 Hb_002035_110 0.2440209308 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
13 Hb_000948_080 0.2449942036 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
14 Hb_028271_020 0.2502812117 - - acyl-CoA oxidase, putative [Ricinus communis]
15 Hb_001433_110 0.2507255473 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
16 Hb_000297_020 0.251952325 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
17 Hb_001269_490 0.252035735 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002260_160 0.2533547478 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000886_030 0.2535689561 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
20 Hb_004724_450 0.2548300433 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007317_080 Hb_007317_080 Hb_002374_380 Hb_002374_380 Hb_007317_080--Hb_002374_380 Hb_000694_060 Hb_000694_060 Hb_007317_080--Hb_000694_060 Hb_021888_120 Hb_021888_120 Hb_007317_080--Hb_021888_120 Hb_000270_740 Hb_000270_740 Hb_007317_080--Hb_000270_740 Hb_017170_030 Hb_017170_030 Hb_007317_080--Hb_017170_030 Hb_001675_030 Hb_001675_030 Hb_007317_080--Hb_001675_030 Hb_002374_380--Hb_000694_060 Hb_001433_110 Hb_001433_110 Hb_002374_380--Hb_001433_110 Hb_004453_080 Hb_004453_080 Hb_002374_380--Hb_004453_080 Hb_105602_010 Hb_105602_010 Hb_002374_380--Hb_105602_010 Hb_003442_070 Hb_003442_070 Hb_002374_380--Hb_003442_070 Hb_007850_080 Hb_007850_080 Hb_002374_380--Hb_007850_080 Hb_000868_100 Hb_000868_100 Hb_000694_060--Hb_000868_100 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050 Hb_007218_100 Hb_007218_100 Hb_021888_120--Hb_007218_100 Hb_000096_130 Hb_000096_130 Hb_021888_120--Hb_000096_130 Hb_007951_130 Hb_007951_130 Hb_021888_120--Hb_007951_130 Hb_000692_020 Hb_000692_020 Hb_021888_120--Hb_000692_020 Hb_002260_160 Hb_002260_160 Hb_021888_120--Hb_002260_160 Hb_007441_240 Hb_007441_240 Hb_000270_740--Hb_007441_240 Hb_004787_040 Hb_004787_040 Hb_000270_740--Hb_004787_040 Hb_000739_140 Hb_000739_140 Hb_000270_740--Hb_000739_140 Hb_000768_130 Hb_000768_130 Hb_000270_740--Hb_000768_130 Hb_158104_020 Hb_158104_020 Hb_000270_740--Hb_158104_020 Hb_000382_020 Hb_000382_020 Hb_000270_740--Hb_000382_020 Hb_006538_190 Hb_006538_190 Hb_017170_030--Hb_006538_190 Hb_000297_020 Hb_000297_020 Hb_017170_030--Hb_000297_020 Hb_162275_020 Hb_162275_020 Hb_017170_030--Hb_162275_020 Hb_000614_170 Hb_000614_170 Hb_017170_030--Hb_000614_170 Hb_000723_170 Hb_000723_170 Hb_017170_030--Hb_000723_170 Hb_007153_040 Hb_007153_040 Hb_017170_030--Hb_007153_040 Hb_172632_050 Hb_172632_050 Hb_001675_030--Hb_172632_050 Hb_003687_030 Hb_003687_030 Hb_001675_030--Hb_003687_030 Hb_000529_280 Hb_000529_280 Hb_001675_030--Hb_000529_280 Hb_012807_130 Hb_012807_130 Hb_001675_030--Hb_012807_130 Hb_028707_070 Hb_028707_070 Hb_001675_030--Hb_028707_070 Hb_001728_020 Hb_001728_020 Hb_001675_030--Hb_001728_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58282 17.8495 2.97236 17.3942 0.258494 0.628754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7213 52.7148 7.02013 34.0897 1.81934

CAGE analysis