Hb_007317_090

Information

Type -
Description -
Location Contig7317: 65363-67058
Sequence    

Annotation

kegg
ID rcu:RCOM_1281640
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012084583.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
swissprot
ID Q9ZQG9
description Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=2
trembl
ID A0A067K6F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20223 PE=3 SV=1
Gene Ontology
ID GO:0005634
description glucan endo- -beta-glucosidase 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56048: 65199-67588 , PASA_asmbl_56049: 65199-69655 , PASA_asmbl_56051: 65358-65937 , PASA_asmbl_56052: 65391-66908 , PASA_asmbl_56053: 65450-66293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_090 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
2 Hb_005754_030 0.20459349 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
3 Hb_000031_230 0.2065542517 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
4 Hb_000261_400 0.2073096951 - - hypothetical protein JCGZ_01125 [Jatropha curcas]
5 Hb_002986_070 0.218227189 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
6 Hb_000589_420 0.2239480312 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
7 Hb_006422_020 0.2274560158 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
8 Hb_000997_100 0.2305082488 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
9 Hb_003053_050 0.2314958528 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
10 Hb_148800_010 0.2326971583 - - -
11 Hb_146420_010 0.2361723804 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_008092_060 0.2376100888 - - -
13 Hb_038862_010 0.2377973673 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
14 Hb_001213_040 0.2381050698 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
15 Hb_012490_110 0.238779565 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
16 Hb_000992_020 0.2390502189 - - monoxygenase, putative [Ricinus communis]
17 Hb_004466_050 0.2410703846 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
18 Hb_001050_020 0.2439111286 - - -
19 Hb_000574_320 0.2445149164 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
20 Hb_153258_020 0.245007467 - - -

Gene co-expression network

sample Hb_007317_090 Hb_007317_090 Hb_005754_030 Hb_005754_030 Hb_007317_090--Hb_005754_030 Hb_000031_230 Hb_000031_230 Hb_007317_090--Hb_000031_230 Hb_000261_400 Hb_000261_400 Hb_007317_090--Hb_000261_400 Hb_002986_070 Hb_002986_070 Hb_007317_090--Hb_002986_070 Hb_000589_420 Hb_000589_420 Hb_007317_090--Hb_000589_420 Hb_006422_020 Hb_006422_020 Hb_007317_090--Hb_006422_020 Hb_001050_050 Hb_001050_050 Hb_005754_030--Hb_001050_050 Hb_005754_030--Hb_002986_070 Hb_007735_060 Hb_007735_060 Hb_005754_030--Hb_007735_060 Hb_002016_050 Hb_002016_050 Hb_005754_030--Hb_002016_050 Hb_015183_080 Hb_015183_080 Hb_005754_030--Hb_015183_080 Hb_007234_010 Hb_007234_010 Hb_005754_030--Hb_007234_010 Hb_003053_050 Hb_003053_050 Hb_000031_230--Hb_003053_050 Hb_000997_100 Hb_000997_100 Hb_000031_230--Hb_000997_100 Hb_007192_090 Hb_007192_090 Hb_000031_230--Hb_007192_090 Hb_008092_060 Hb_008092_060 Hb_000031_230--Hb_008092_060 Hb_001250_020 Hb_001250_020 Hb_000031_230--Hb_001250_020 Hb_001408_030 Hb_001408_030 Hb_000031_230--Hb_001408_030 Hb_000261_400--Hb_003053_050 Hb_005799_020 Hb_005799_020 Hb_000261_400--Hb_005799_020 Hb_000261_400--Hb_000031_230 Hb_001221_200 Hb_001221_200 Hb_000261_400--Hb_001221_200 Hb_000261_400--Hb_008092_060 Hb_001087_010 Hb_001087_010 Hb_000261_400--Hb_001087_010 Hb_002986_070--Hb_002016_050 Hb_007545_130 Hb_007545_130 Hb_002986_070--Hb_007545_130 Hb_015778_060 Hb_015778_060 Hb_002986_070--Hb_015778_060 Hb_005523_010 Hb_005523_010 Hb_002986_070--Hb_005523_010 Hb_000186_080 Hb_000186_080 Hb_002986_070--Hb_000186_080 Hb_013459_010 Hb_013459_010 Hb_002986_070--Hb_013459_010 Hb_000556_070 Hb_000556_070 Hb_000589_420--Hb_000556_070 Hb_167775_010 Hb_167775_010 Hb_000589_420--Hb_167775_010 Hb_000567_240 Hb_000567_240 Hb_000589_420--Hb_000567_240 Hb_006717_010 Hb_006717_010 Hb_000589_420--Hb_006717_010 Hb_000321_120 Hb_000321_120 Hb_000589_420--Hb_000321_120 Hb_003912_080 Hb_003912_080 Hb_000589_420--Hb_003912_080 Hb_006422_020--Hb_000997_100 Hb_006422_020--Hb_000031_230 Hb_000815_230 Hb_000815_230 Hb_006422_020--Hb_000815_230 Hb_000042_060 Hb_000042_060 Hb_006422_020--Hb_000042_060 Hb_000964_170 Hb_000964_170 Hb_006422_020--Hb_000964_170 Hb_003849_160 Hb_003849_160 Hb_006422_020--Hb_003849_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6288 88.1507 46.6596 36.7892 4.44273 74.4764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83993 0.510614 4.80876 9.97163 135.527

CAGE analysis