Hb_007317_110

Information

Type -
Description -
Location Contig7317: 79577-85679
Sequence    

Annotation

kegg
ID rcu:RCOM_1281690
description nucleolar phosphoprotein, putative
nr
ID XP_012076259.1
description PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
swissprot
ID Q7TP47
description Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1
trembl
ID A0A067KDK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12820 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein r-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56054: 79187-85669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_110 0.0 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
2 Hb_006827_020 0.0422021677 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000085_160 0.0498228428 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
4 Hb_003665_060 0.0513861744 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
5 Hb_000808_270 0.0543114051 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
6 Hb_003964_070 0.0547832458 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
7 Hb_007059_010 0.0557072237 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
8 Hb_000011_200 0.0562910153 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
9 Hb_001493_030 0.0568687826 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
10 Hb_000538_100 0.058083125 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006252_040 0.0596441849 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
12 Hb_000879_200 0.0598185752 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
13 Hb_103012_010 0.0615038726 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
14 Hb_003025_110 0.0626741919 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
15 Hb_000010_330 0.0632171839 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
16 Hb_006620_020 0.0635622772 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
17 Hb_003030_070 0.0637932119 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
18 Hb_000630_050 0.0640260691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000120_670 0.0655946838 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
20 Hb_004310_150 0.0675042976 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]

Gene co-expression network

sample Hb_007317_110 Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_007317_110--Hb_006827_020 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010 Hb_006827_020--Hb_000808_270 Hb_006827_020--Hb_007059_010 Hb_000538_100 Hb_000538_100 Hb_006827_020--Hb_000538_100 Hb_000011_200 Hb_000011_200 Hb_006827_020--Hb_000011_200 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003665_060--Hb_003964_070 Hb_000230_560 Hb_000230_560 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_003175_010 Hb_003175_010 Hb_000808_270--Hb_003175_010 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_000629_010 Hb_000629_010 Hb_000808_270--Hb_000629_010 Hb_000120_670 Hb_000120_670 Hb_003964_070--Hb_000120_670 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_002783_240 Hb_002783_240 Hb_007059_010--Hb_002783_240 Hb_007059_010--Hb_000538_100 Hb_103012_010 Hb_103012_010 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2967 16.5439 18.044 20.4174 31.8468 36.738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7987 24.4643 22.4925 22.5897 13.1359

CAGE analysis