Hb_007317_130

Information

Type -
Description -
Location Contig7317: 88782-94765
Sequence    

Annotation

kegg
ID gmx:102667098
description uncharacterized LOC102667098
nr
ID AAX95863.1
description retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q53P05
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56056: 89642-89932 , PASA_asmbl_56059: 93747-94276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_130 0.0 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
2 Hb_002078_270 0.1615557265 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
3 Hb_000958_100 0.1727523819 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_001080_030 0.1778275674 - - AMP dependent ligase, putative [Ricinus communis]
5 Hb_000212_370 0.1947979421 - - thioredoxin f-type, putative [Ricinus communis]
6 Hb_005695_080 0.1974598315 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
7 Hb_000032_400 0.1988289718 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
8 Hb_003124_110 0.1990343094 - - hypothetical protein VITISV_026680 [Vitis vinifera]
9 Hb_003494_130 0.2006279784 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
10 Hb_007576_150 0.2013402068 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
11 Hb_173808_010 0.2021821693 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
12 Hb_001862_090 0.203416969 - - hypothetical protein VITISV_026680 [Vitis vinifera]
13 Hb_004109_130 0.2056907705 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
14 Hb_159809_090 0.2073330367 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
15 Hb_005917_030 0.2079604159 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010565_030 0.2085238581 - - hypothetical protein VITISV_006810 [Vitis vinifera]
17 Hb_021079_020 0.2095017566 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
18 Hb_001865_010 0.2105589203 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
19 Hb_015778_060 0.2111370642 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
20 Hb_011609_210 0.2124627066 - - Uncharacterized protein TCM_011393 [Theobroma cacao]

Gene co-expression network

sample Hb_007317_130 Hb_007317_130 Hb_002078_270 Hb_002078_270 Hb_007317_130--Hb_002078_270 Hb_000958_100 Hb_000958_100 Hb_007317_130--Hb_000958_100 Hb_001080_030 Hb_001080_030 Hb_007317_130--Hb_001080_030 Hb_000212_370 Hb_000212_370 Hb_007317_130--Hb_000212_370 Hb_005695_080 Hb_005695_080 Hb_007317_130--Hb_005695_080 Hb_000032_400 Hb_000032_400 Hb_007317_130--Hb_000032_400 Hb_005917_030 Hb_005917_030 Hb_002078_270--Hb_005917_030 Hb_000920_130 Hb_000920_130 Hb_002078_270--Hb_000920_130 Hb_002078_270--Hb_005695_080 Hb_001054_070 Hb_001054_070 Hb_002078_270--Hb_001054_070 Hb_000406_190 Hb_000406_190 Hb_002078_270--Hb_000406_190 Hb_021079_020 Hb_021079_020 Hb_000958_100--Hb_021079_020 Hb_015778_060 Hb_015778_060 Hb_000958_100--Hb_015778_060 Hb_000958_100--Hb_000212_370 Hb_004162_190 Hb_004162_190 Hb_000958_100--Hb_004162_190 Hb_000958_100--Hb_002078_270 Hb_052946_010 Hb_052946_010 Hb_001080_030--Hb_052946_010 Hb_000731_290 Hb_000731_290 Hb_001080_030--Hb_000731_290 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_008511_140 Hb_008511_140 Hb_001080_030--Hb_008511_140 Hb_003226_190 Hb_003226_190 Hb_001080_030--Hb_003226_190 Hb_000212_370--Hb_021079_020 Hb_000212_370--Hb_004162_190 Hb_005288_180 Hb_005288_180 Hb_000212_370--Hb_005288_180 Hb_007576_150 Hb_007576_150 Hb_000212_370--Hb_007576_150 Hb_002799_130 Hb_002799_130 Hb_000212_370--Hb_002799_130 Hb_003494_130 Hb_003494_130 Hb_000212_370--Hb_003494_130 Hb_001865_010 Hb_001865_010 Hb_005695_080--Hb_001865_010 Hb_005695_080--Hb_000406_190 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_001969_130 Hb_001969_130 Hb_005695_080--Hb_001969_130 Hb_005695_080--Hb_052946_010 Hb_011053_030 Hb_011053_030 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0554274 1.40477 0.553981 0.357301 0.0954625 0.0985089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.465185 0.226102 0.329831 0.384215 2.55239

CAGE analysis