Hb_007317_140

Information

Type -
Description -
Location Contig7317: 89620-102883
Sequence    

Annotation

kegg
ID rcu:RCOM_1281710
description expressed protein, putative
nr
ID XP_002523817.1
description expressed protein, putative [Ricinus communis]
swissprot
ID Q875V8
description Protein transport protein SEC24-1 OS=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) GN=SEC241 PE=3 SV=1
trembl
ID B9SCU8
description Expressed protein, putative OS=Ricinus communis GN=RCOM_1281710 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec24-like at3g07100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56057: 89970-97808 , PASA_asmbl_56058: 97308-97758 , PASA_asmbl_56060: 103374-106348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_140 0.0 - - expressed protein, putative [Ricinus communis]
2 Hb_028912_050 0.0734285101 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
3 Hb_010710_070 0.0756966805 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
4 Hb_000261_060 0.0812059906 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
5 Hb_001301_100 0.0823699373 - - transporter, putative [Ricinus communis]
6 Hb_001442_040 0.088092873 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
7 Hb_003020_030 0.0896729162 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
8 Hb_007645_100 0.0897542732 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
9 Hb_003847_130 0.0902181727 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
10 Hb_000139_370 0.0927125113 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
11 Hb_004963_030 0.0927268178 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_001008_120 0.0940530808 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
13 Hb_000254_090 0.0945420751 - - PREDICTED: la protein 2 [Jatropha curcas]
14 Hb_000352_190 0.09605485 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
15 Hb_166222_010 0.0963436636 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
16 Hb_000922_380 0.0969601645 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
17 Hb_005253_030 0.097177635 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001014_160 0.0972334655 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
19 Hb_004225_050 0.0975402399 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
20 Hb_007922_020 0.0988677107 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]

Gene co-expression network

sample Hb_007317_140 Hb_007317_140 Hb_028912_050 Hb_028912_050 Hb_007317_140--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_007317_140--Hb_010710_070 Hb_000261_060 Hb_000261_060 Hb_007317_140--Hb_000261_060 Hb_001301_100 Hb_001301_100 Hb_007317_140--Hb_001301_100 Hb_001442_040 Hb_001442_040 Hb_007317_140--Hb_001442_040 Hb_003020_030 Hb_003020_030 Hb_007317_140--Hb_003020_030 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_028912_050--Hb_010710_070 Hb_188063_020 Hb_188063_020 Hb_028912_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_010710_070--Hb_004963_030 Hb_010710_070--Hb_188063_020 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_002849_100 Hb_002849_100 Hb_010710_070--Hb_002849_100 Hb_010710_070--Hb_001442_040 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_036790_080 Hb_036790_080 Hb_000261_060--Hb_036790_080 Hb_001369_750 Hb_001369_750 Hb_000261_060--Hb_001369_750 Hb_005253_030 Hb_005253_030 Hb_000261_060--Hb_005253_030 Hb_000261_060--Hb_001008_120 Hb_001301_100--Hb_001442_040 Hb_003847_130 Hb_003847_130 Hb_001301_100--Hb_003847_130 Hb_002044_150 Hb_002044_150 Hb_001301_100--Hb_002044_150 Hb_004846_220 Hb_004846_220 Hb_001301_100--Hb_004846_220 Hb_002592_060 Hb_002592_060 Hb_001301_100--Hb_002592_060 Hb_001442_040--Hb_004963_030 Hb_001442_040--Hb_003847_130 Hb_012733_030 Hb_012733_030 Hb_001442_040--Hb_012733_030 Hb_001442_040--Hb_002592_060 Hb_001014_160 Hb_001014_160 Hb_001442_040--Hb_001014_160 Hb_000025_270 Hb_000025_270 Hb_003020_030--Hb_000025_270 Hb_003020_030--Hb_001008_120 Hb_003020_030--Hb_036790_080 Hb_001936_090 Hb_001936_090 Hb_003020_030--Hb_001936_090 Hb_000033_110 Hb_000033_110 Hb_003020_030--Hb_000033_110 Hb_006483_110 Hb_006483_110 Hb_003020_030--Hb_006483_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48357 2.48383 2.5871 3.37635 6.76805 6.33646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18296 4.26783 5.08126 5.56424 8.08949

CAGE analysis