Hb_007317_160

Information

Type -
Description -
Location Contig7317: 107324-109536
Sequence    

Annotation

kegg
ID rcu:RCOM_1281740
description hypothetical protein
nr
ID XP_012076115.1
description PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZUX4
description Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana GN=At2g27730 PE=1 SV=1
trembl
ID A0A067KE61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12683 PE=4 SV=1
Gene Ontology
ID GO:0005730
description copper ion binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56061: 106635-109594 , PASA_asmbl_56062: 107379-108848 , PASA_asmbl_56064: 107489-107671
cDNA
(Sanger)
(ID:Location)		 007_L20.ab1: 106635-109580

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_160 0.0 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
2 Hb_006452_040 0.0700071307 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
3 Hb_001155_040 0.0765864775 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
4 Hb_005463_140 0.0884390267 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
5 Hb_012539_020 0.0929253581 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
6 Hb_000012_100 0.0935596721 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
7 Hb_005663_120 0.0937954162 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
8 Hb_006569_100 0.0944151054 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
9 Hb_002631_020 0.0958263396 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
10 Hb_004449_200 0.095859409 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
11 Hb_020419_020 0.0976641938 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_005527_040 0.0980336021 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
13 Hb_001221_310 0.0984128093 - - sec61 gamma subunit, putative [Ricinus communis]
14 Hb_050806_010 0.0987560092 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
15 Hb_004156_040 0.0991616665 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
16 Hb_001314_040 0.0997473869 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
17 Hb_007218_150 0.1006336639 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
18 Hb_000087_130 0.1011779594 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
19 Hb_001780_050 0.1045740596 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
20 Hb_000122_020 0.104581949 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_007317_160 Hb_007317_160 Hb_006452_040 Hb_006452_040 Hb_007317_160--Hb_006452_040 Hb_001155_040 Hb_001155_040 Hb_007317_160--Hb_001155_040 Hb_005463_140 Hb_005463_140 Hb_007317_160--Hb_005463_140 Hb_012539_020 Hb_012539_020 Hb_007317_160--Hb_012539_020 Hb_000012_100 Hb_000012_100 Hb_007317_160--Hb_000012_100 Hb_005663_120 Hb_005663_120 Hb_007317_160--Hb_005663_120 Hb_003018_050 Hb_003018_050 Hb_006452_040--Hb_003018_050 Hb_002631_020 Hb_002631_020 Hb_006452_040--Hb_002631_020 Hb_006452_040--Hb_001155_040 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_006452_040--Hb_005463_140 Hb_000087_130 Hb_000087_130 Hb_001155_040--Hb_000087_130 Hb_001155_040--Hb_005463_140 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_012539_020--Hb_005663_120 Hb_000181_300 Hb_000181_300 Hb_000012_100--Hb_000181_300 Hb_000193_120 Hb_000193_120 Hb_000012_100--Hb_000193_120 Hb_001634_040 Hb_001634_040 Hb_000012_100--Hb_001634_040 Hb_004156_040 Hb_004156_040 Hb_000012_100--Hb_004156_040 Hb_003053_030 Hb_003053_030 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_005663_120--Hb_000300_390 Hb_005663_120--Hb_002316_120 Hb_032969_030 Hb_032969_030 Hb_005663_120--Hb_032969_030 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_005663_120--Hb_000389_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.3228 21.467 96.4503 193.477 104.596 95.6132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
419.179 552.399 293.684 103.24 76.8874

CAGE analysis