Hb_007317_190

Information

Type -
Description -
Location Contig7317: 124873-128107
Sequence    

Annotation

kegg
ID rcu:RCOM_0659080
description retinoblastoma-binding protein, putative (EC:2.3.1.48)
nr
ID XP_012072627.1
description PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
swissprot
ID O22466
description WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1
trembl
ID A0A067KNK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06693 PE=4 SV=1
Gene Ontology
ID GO:0005677
description wd-40 repeat-containing protein msi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56069: 124864-128064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_190 0.0 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
2 Hb_000568_040 0.060580341 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
3 Hb_006913_040 0.077120642 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
4 Hb_004108_140 0.0817976927 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
5 Hb_002232_170 0.0876276701 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
6 Hb_000522_090 0.0884507854 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
7 Hb_016657_010 0.0890250306 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
8 Hb_001019_170 0.0896837076 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
9 Hb_000866_030 0.0919561591 - - hypothetical protein RCOM_1615820 [Ricinus communis]
10 Hb_026099_010 0.0920211574 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
11 Hb_000703_080 0.0925467675 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
12 Hb_003728_030 0.0928050263 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
13 Hb_000370_030 0.0938143139 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
14 Hb_002111_030 0.0940159053 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
15 Hb_000300_280 0.0945779014 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_000236_370 0.0952551204 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
17 Hb_123475_010 0.0959243194 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
18 Hb_061908_010 0.0962058333 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
19 Hb_000333_100 0.096215998 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
20 Hb_002982_040 0.0963425428 - - mta/sah nucleosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007317_190 Hb_007317_190 Hb_000568_040 Hb_000568_040 Hb_007317_190--Hb_000568_040 Hb_006913_040 Hb_006913_040 Hb_007317_190--Hb_006913_040 Hb_004108_140 Hb_004108_140 Hb_007317_190--Hb_004108_140 Hb_002232_170 Hb_002232_170 Hb_007317_190--Hb_002232_170 Hb_000522_090 Hb_000522_090 Hb_007317_190--Hb_000522_090 Hb_016657_010 Hb_016657_010 Hb_007317_190--Hb_016657_010 Hb_001040_160 Hb_001040_160 Hb_000568_040--Hb_001040_160 Hb_000017_340 Hb_000017_340 Hb_000568_040--Hb_000017_340 Hb_000370_030 Hb_000370_030 Hb_000568_040--Hb_000370_030 Hb_002067_150 Hb_002067_150 Hb_000568_040--Hb_002067_150 Hb_001307_140 Hb_001307_140 Hb_000568_040--Hb_001307_140 Hb_000645_150 Hb_000645_150 Hb_006913_040--Hb_000645_150 Hb_001829_010 Hb_001829_010 Hb_006913_040--Hb_001829_010 Hb_001019_170 Hb_001019_170 Hb_006913_040--Hb_001019_170 Hb_002820_040 Hb_002820_040 Hb_006913_040--Hb_002820_040 Hb_002097_090 Hb_002097_090 Hb_006913_040--Hb_002097_090 Hb_000333_100 Hb_000333_100 Hb_006913_040--Hb_000333_100 Hb_026099_010 Hb_026099_010 Hb_004108_140--Hb_026099_010 Hb_185679_010 Hb_185679_010 Hb_004108_140--Hb_185679_010 Hb_003994_240 Hb_003994_240 Hb_004108_140--Hb_003994_240 Hb_001936_020 Hb_001936_020 Hb_004108_140--Hb_001936_020 Hb_003935_030 Hb_003935_030 Hb_004108_140--Hb_003935_030 Hb_004370_030 Hb_004370_030 Hb_004108_140--Hb_004370_030 Hb_007101_100 Hb_007101_100 Hb_002232_170--Hb_007101_100 Hb_015941_030 Hb_015941_030 Hb_002232_170--Hb_015941_030 Hb_000997_060 Hb_000997_060 Hb_002232_170--Hb_000997_060 Hb_000169_010 Hb_000169_010 Hb_002232_170--Hb_000169_010 Hb_002374_160 Hb_002374_160 Hb_002232_170--Hb_002374_160 Hb_000808_040 Hb_000808_040 Hb_002232_170--Hb_000808_040 Hb_000803_300 Hb_000803_300 Hb_000522_090--Hb_000803_300 Hb_000522_090--Hb_002097_090 Hb_005245_130 Hb_005245_130 Hb_000522_090--Hb_005245_130 Hb_004934_090 Hb_004934_090 Hb_000522_090--Hb_004934_090 Hb_005977_090 Hb_005977_090 Hb_000522_090--Hb_005977_090 Hb_002030_030 Hb_002030_030 Hb_000522_090--Hb_002030_030 Hb_000046_440 Hb_000046_440 Hb_016657_010--Hb_000046_440 Hb_000260_220 Hb_000260_220 Hb_016657_010--Hb_000260_220 Hb_016657_010--Hb_000522_090 Hb_016657_010--Hb_005977_090 Hb_000556_020 Hb_000556_020 Hb_016657_010--Hb_000556_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.3807 52.9279 16.3527 30.5746 80.9857 129.621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.5874 38.1012 37.7522 51.6308 15.7469

CAGE analysis