Hb_007317_200

Information

Type -
Description -
Location Contig7317: 128730-130289
Sequence    

Annotation

kegg
ID rcu:RCOM_1281790
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002523825.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LN22
description Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1
trembl
ID B9SCV6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1281790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56069: 124864-128064 , PASA_asmbl_56070: 129013-129483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_200 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_004724_080 0.0750681649 - - conserved hypothetical protein [Ricinus communis]
3 Hb_075449_010 0.0789780146 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
4 Hb_017358_030 0.0794044776 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
5 Hb_000352_270 0.0820808638 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
6 Hb_006452_170 0.0848142375 - - -
7 Hb_000614_160 0.0860169335 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
8 Hb_000047_030 0.0883724209 - - tfiif-alpha, putative [Ricinus communis]
9 Hb_000777_040 0.0904684171 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
10 Hb_000063_140 0.0909437573 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
11 Hb_007389_010 0.0910008666 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
12 Hb_000928_210 0.0911426494 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
13 Hb_000866_260 0.0912123956 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
14 Hb_002888_030 0.0918989198 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_000917_060 0.0926978749 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
16 Hb_138585_090 0.0930941542 - - Long chain base2 isoform 2 [Theobroma cacao]
17 Hb_002046_180 0.0940656457 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
18 Hb_085863_030 0.0952726057 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
19 Hb_002110_150 0.0963723624 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
20 Hb_003053_020 0.0969577607 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_007317_200 Hb_007317_200 Hb_004724_080 Hb_004724_080 Hb_007317_200--Hb_004724_080 Hb_075449_010 Hb_075449_010 Hb_007317_200--Hb_075449_010 Hb_017358_030 Hb_017358_030 Hb_007317_200--Hb_017358_030 Hb_000352_270 Hb_000352_270 Hb_007317_200--Hb_000352_270 Hb_006452_170 Hb_006452_170 Hb_007317_200--Hb_006452_170 Hb_000614_160 Hb_000614_160 Hb_007317_200--Hb_000614_160 Hb_000928_210 Hb_000928_210 Hb_004724_080--Hb_000928_210 Hb_002739_100 Hb_002739_100 Hb_004724_080--Hb_002739_100 Hb_004724_080--Hb_017358_030 Hb_000876_070 Hb_000876_070 Hb_004724_080--Hb_000876_070 Hb_002105_040 Hb_002105_040 Hb_004724_080--Hb_002105_040 Hb_000003_250 Hb_000003_250 Hb_004724_080--Hb_000003_250 Hb_002863_050 Hb_002863_050 Hb_075449_010--Hb_002863_050 Hb_008623_020 Hb_008623_020 Hb_075449_010--Hb_008623_020 Hb_000062_220 Hb_000062_220 Hb_075449_010--Hb_000062_220 Hb_012019_010 Hb_012019_010 Hb_075449_010--Hb_012019_010 Hb_075449_010--Hb_000614_160 Hb_005779_060 Hb_005779_060 Hb_075449_010--Hb_005779_060 Hb_000165_250 Hb_000165_250 Hb_017358_030--Hb_000165_250 Hb_000866_260 Hb_000866_260 Hb_017358_030--Hb_000866_260 Hb_007389_010 Hb_007389_010 Hb_017358_030--Hb_007389_010 Hb_017358_030--Hb_002739_100 Hb_000029_050 Hb_000029_050 Hb_017358_030--Hb_000029_050 Hb_000917_060 Hb_000917_060 Hb_017358_030--Hb_000917_060 Hb_003020_220 Hb_003020_220 Hb_000352_270--Hb_003020_220 Hb_082609_010 Hb_082609_010 Hb_000352_270--Hb_082609_010 Hb_002725_120 Hb_002725_120 Hb_000352_270--Hb_002725_120 Hb_000614_220 Hb_000614_220 Hb_000352_270--Hb_000614_220 Hb_001318_270 Hb_001318_270 Hb_000352_270--Hb_001318_270 Hb_004324_070 Hb_004324_070 Hb_006452_170--Hb_004324_070 Hb_050514_010 Hb_050514_010 Hb_006452_170--Hb_050514_010 Hb_006452_170--Hb_007389_010 Hb_006452_170--Hb_000866_260 Hb_002235_250 Hb_002235_250 Hb_006452_170--Hb_002235_250 Hb_000614_160--Hb_007389_010 Hb_000260_030 Hb_000260_030 Hb_000614_160--Hb_000260_030 Hb_005496_140 Hb_005496_140 Hb_000614_160--Hb_005496_140 Hb_000614_160--Hb_012019_010 Hb_000614_160--Hb_000614_220 Hb_002046_180 Hb_002046_180 Hb_000614_160--Hb_002046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.85268 4.10088 5.25912 3.92388 6.7239 5.9744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.83638 10.7808 12.3741 3.79501 6.39809

CAGE analysis