Hb_007317_210

Information

Type -
Description -
Location Contig7317: 132008-134782
Sequence    

Annotation

kegg
ID rcu:RCOM_1281800
description ef-hand calcium binding protein, putative
nr
ID XP_012076123.1
description PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
swissprot
ID Q9ZQH1
description Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2
trembl
ID A0A067KHD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12699 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56072: 132138-134745 , PASA_asmbl_56073: 132102-134636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_210 0.0 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
2 Hb_011571_010 0.0561854134 - - Metal tolerance protein C4, putative [Ricinus communis]
3 Hb_002496_030 0.0754970603 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
4 Hb_007951_050 0.0809056218 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_004109_090 0.0815182219 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000395_170 0.0819341466 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
7 Hb_000170_210 0.0833705777 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003175_010 0.0839783053 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
9 Hb_006332_020 0.0841513539 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
10 Hb_168000_010 0.0848292908 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
11 Hb_003001_140 0.0869847733 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
12 Hb_061090_010 0.0871801821 - - RAN BINDING protein 1 [Populus trichocarpa]
13 Hb_001818_090 0.0871895482 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000808_230 0.0882513042 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
15 Hb_000030_300 0.0882551812 - - Thioredoxin, putative [Ricinus communis]
16 Hb_006922_110 0.0894676233 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
17 Hb_000086_400 0.0901558863 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_002183_090 0.0930174439 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
19 Hb_000510_320 0.0932422986 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
20 Hb_006541_030 0.0933578572 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]

Gene co-expression network

sample Hb_007317_210 Hb_007317_210 Hb_011571_010 Hb_011571_010 Hb_007317_210--Hb_011571_010 Hb_002496_030 Hb_002496_030 Hb_007317_210--Hb_002496_030 Hb_007951_050 Hb_007951_050 Hb_007317_210--Hb_007951_050 Hb_004109_090 Hb_004109_090 Hb_007317_210--Hb_004109_090 Hb_000395_170 Hb_000395_170 Hb_007317_210--Hb_000395_170 Hb_000170_210 Hb_000170_210 Hb_007317_210--Hb_000170_210 Hb_112798_030 Hb_112798_030 Hb_011571_010--Hb_112798_030 Hb_000107_620 Hb_000107_620 Hb_011571_010--Hb_000107_620 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_001811_050 Hb_001811_050 Hb_011571_010--Hb_001811_050 Hb_006541_030 Hb_006541_030 Hb_011571_010--Hb_006541_030 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_000754_060 Hb_000754_060 Hb_007951_050--Hb_000754_060 Hb_001159_100 Hb_001159_100 Hb_007951_050--Hb_001159_100 Hb_015306_020 Hb_015306_020 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_003175_010 Hb_003175_010 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_004724_200 Hb_004724_200 Hb_004109_090--Hb_004724_200 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_005663_060 Hb_005663_060 Hb_004109_090--Hb_005663_060 Hb_000395_170--Hb_003175_010 Hb_000926_280 Hb_000926_280 Hb_000395_170--Hb_000926_280 Hb_148912_010 Hb_148912_010 Hb_000395_170--Hb_148912_010 Hb_048937_040 Hb_048937_040 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_000395_170--Hb_004109_090 Hb_000170_210--Hb_003175_010 Hb_000796_220 Hb_000796_220 Hb_000170_210--Hb_000796_220 Hb_002044_080 Hb_002044_080 Hb_000170_210--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_000170_210--Hb_000808_230 Hb_000170_210--Hb_000395_170 Hb_000170_210--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5337 10.0909 12.4324 10.2285 23.4467 33.5061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2883 33.1837 38.3477 17.3428 9.97882

CAGE analysis