Hb_007317_220

Information

Type -
Description -
Location Contig7317: 134874-136607
Sequence    

Annotation

kegg
ID tcc:TCM_041380
description hypothetical protein
nr
ID KDP34420.1
description hypothetical protein JCGZ_12701 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12701 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56074: 134882-136591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_220 0.0 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
2 Hb_004852_020 0.0822817324 - - -
3 Hb_002374_340 0.1067853462 - - Two-component response regulator ARR9, putative [Ricinus communis]
4 Hb_017134_040 0.1089341876 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
5 Hb_000933_140 0.1093705827 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
6 Hb_008016_010 0.1097729807 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
7 Hb_023675_010 0.1124247119 - - -
8 Hb_002942_030 0.1127942041 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
9 Hb_000603_220 0.1135258042 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
10 Hb_000175_520 0.114253432 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_006787_040 0.1189772705 - - polyadenylate-binding protein, putative [Ricinus communis]
12 Hb_005245_090 0.1194775495 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
13 Hb_115919_020 0.1195170499 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
14 Hb_002518_250 0.1216824782 - - conserved hypothetical protein 10 [Hevea brasiliensis]
15 Hb_005348_080 0.1222784548 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
16 Hb_134789_010 0.1223810257 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
17 Hb_000193_230 0.1247464095 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
18 Hb_002890_220 0.1253456432 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
19 Hb_000442_030 0.1275609688 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000787_070 0.1276198654 - - Early nodulin 55-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007317_220 Hb_007317_220 Hb_004852_020 Hb_004852_020 Hb_007317_220--Hb_004852_020 Hb_002374_340 Hb_002374_340 Hb_007317_220--Hb_002374_340 Hb_017134_040 Hb_017134_040 Hb_007317_220--Hb_017134_040 Hb_000933_140 Hb_000933_140 Hb_007317_220--Hb_000933_140 Hb_008016_010 Hb_008016_010 Hb_007317_220--Hb_008016_010 Hb_023675_010 Hb_023675_010 Hb_007317_220--Hb_023675_010 Hb_000175_520 Hb_000175_520 Hb_004852_020--Hb_000175_520 Hb_002942_030 Hb_002942_030 Hb_004852_020--Hb_002942_030 Hb_004852_020--Hb_023675_010 Hb_002518_250 Hb_002518_250 Hb_004852_020--Hb_002518_250 Hb_001248_020 Hb_001248_020 Hb_004852_020--Hb_001248_020 Hb_002890_220 Hb_002890_220 Hb_002374_340--Hb_002890_220 Hb_002374_340--Hb_002942_030 Hb_002374_340--Hb_017134_040 Hb_005245_090 Hb_005245_090 Hb_002374_340--Hb_005245_090 Hb_000771_140 Hb_000771_140 Hb_002374_340--Hb_000771_140 Hb_005730_020 Hb_005730_020 Hb_017134_040--Hb_005730_020 Hb_017134_040--Hb_002890_220 Hb_000329_610 Hb_000329_610 Hb_017134_040--Hb_000329_610 Hb_007178_010 Hb_007178_010 Hb_017134_040--Hb_007178_010 Hb_005063_010 Hb_005063_010 Hb_017134_040--Hb_005063_010 Hb_003786_110 Hb_003786_110 Hb_017134_040--Hb_003786_110 Hb_000933_140--Hb_008016_010 Hb_026048_090 Hb_026048_090 Hb_000933_140--Hb_026048_090 Hb_001437_040 Hb_001437_040 Hb_000933_140--Hb_001437_040 Hb_007992_030 Hb_007992_030 Hb_000933_140--Hb_007992_030 Hb_000933_140--Hb_002518_250 Hb_098709_010 Hb_098709_010 Hb_000933_140--Hb_098709_010 Hb_008016_010--Hb_001437_040 Hb_000189_530 Hb_000189_530 Hb_008016_010--Hb_000189_530 Hb_008016_010--Hb_098709_010 Hb_000366_100 Hb_000366_100 Hb_008016_010--Hb_000366_100 Hb_005348_080 Hb_005348_080 Hb_008016_010--Hb_005348_080 Hb_023675_010--Hb_000366_100 Hb_036369_010 Hb_036369_010 Hb_023675_010--Hb_036369_010 Hb_077562_040 Hb_077562_040 Hb_023675_010--Hb_077562_040 Hb_023675_010--Hb_001248_020 Hb_012395_100 Hb_012395_100 Hb_023675_010--Hb_012395_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
181.954 4.12393 2.95907 11.7195 261.087 332.06
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
304.052 211.905 152.12 27.6294 5.83987

CAGE analysis