Hb_007320_020

Information

Type -
Description -
Location Contig7320: 24810-34536
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06050g
description POPTRDRAFT_855146; hypothetical protein
nr
ID XP_011010908.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID B9H2E2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06050g PE=4 SV=2
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007320_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
2 Hb_000685_040 0.0942362612 - - hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]
3 Hb_001971_020 0.1181492989 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
4 Hb_000059_080 0.1207933322 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
5 Hb_003767_010 0.130495027 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
6 Hb_010812_140 0.1344199657 - - protein binding protein, putative [Ricinus communis]
7 Hb_000377_160 0.1349424354 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
8 Hb_000649_280 0.1392457852 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
9 Hb_000383_020 0.1463528882 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_005470_040 0.1475711685 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
11 Hb_001357_360 0.1506635782 - - zinc finger protein, putative [Ricinus communis]
12 Hb_031949_010 0.1514026649 - - -
13 Hb_004713_050 0.1538659419 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
14 Hb_109489_010 0.1540130387 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
15 Hb_003212_010 0.1547934371 - - sucrose transporter 4 [Hevea brasiliensis]
16 Hb_001085_230 0.1550958251 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
17 Hb_123560_050 0.1584989174 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
18 Hb_000264_340 0.1596225019 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
19 Hb_000563_120 0.1597911768 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
20 Hb_001907_020 0.1682767002 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]

Gene co-expression network

sample Hb_007320_020 Hb_007320_020 Hb_000685_040 Hb_000685_040 Hb_007320_020--Hb_000685_040 Hb_001971_020 Hb_001971_020 Hb_007320_020--Hb_001971_020 Hb_000059_080 Hb_000059_080 Hb_007320_020--Hb_000059_080 Hb_003767_010 Hb_003767_010 Hb_007320_020--Hb_003767_010 Hb_010812_140 Hb_010812_140 Hb_007320_020--Hb_010812_140 Hb_000377_160 Hb_000377_160 Hb_007320_020--Hb_000377_160 Hb_000685_040--Hb_010812_140 Hb_001675_130 Hb_001675_130 Hb_000685_040--Hb_001675_130 Hb_010813_030 Hb_010813_030 Hb_000685_040--Hb_010813_030 Hb_000685_040--Hb_003767_010 Hb_000649_280 Hb_000649_280 Hb_000685_040--Hb_000649_280 Hb_001357_360 Hb_001357_360 Hb_001971_020--Hb_001357_360 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_008111_010 Hb_008111_010 Hb_001971_020--Hb_008111_010 Hb_005306_020 Hb_005306_020 Hb_001971_020--Hb_005306_020 Hb_000264_340 Hb_000264_340 Hb_001971_020--Hb_000264_340 Hb_003212_010 Hb_003212_010 Hb_000059_080--Hb_003212_010 Hb_000059_080--Hb_003767_010 Hb_000059_080--Hb_000264_340 Hb_005470_040 Hb_005470_040 Hb_000059_080--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000059_080--Hb_109489_010 Hb_003767_010--Hb_000377_160 Hb_003767_010--Hb_000649_280 Hb_029866_110 Hb_029866_110 Hb_003767_010--Hb_029866_110 Hb_002217_200 Hb_002217_200 Hb_003767_010--Hb_002217_200 Hb_123560_050 Hb_123560_050 Hb_003767_010--Hb_123560_050 Hb_003767_010--Hb_109489_010 Hb_012023_010 Hb_012023_010 Hb_010812_140--Hb_012023_010 Hb_001619_010 Hb_001619_010 Hb_010812_140--Hb_001619_010 Hb_010812_140--Hb_003767_010 Hb_031949_010 Hb_031949_010 Hb_010812_140--Hb_031949_010 Hb_000377_160--Hb_000649_280 Hb_000377_160--Hb_123560_050 Hb_000377_160--Hb_005470_040 Hb_000377_160--Hb_000563_120 Hb_000377_160--Hb_031949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0578288 0.00626268 0.0146521 0 0.00384355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0508283 0.0486249

CAGE analysis