Hb_007320_040

Information

Type -
Description -
Location Contig7320: 50871-54387
Sequence    

Annotation

kegg
ID rcu:RCOM_1463270
description Spotted leaf protein, putative
nr
ID XP_012076112.1
description PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
swissprot
ID Q9LT79
description U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1
trembl
ID A0A067KHF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12798 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007320_040 0.0 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
2 Hb_177880_010 0.0295790369 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_004834_020 0.057132098 - - major allergen Pru ar 1-like [Jatropha curcas]
4 Hb_002966_030 0.0666744772 - - conserved hypothetical protein [Ricinus communis]
5 Hb_126535_010 0.0717276075 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
6 Hb_124247_030 0.0843108546 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
7 Hb_002747_010 0.0912832383 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
8 Hb_175167_020 0.0916993679 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012532_020 0.0933376047 - - Isoflavone reductase, putative [Ricinus communis]
10 Hb_007897_040 0.0950884432 - - ATP binding protein, putative [Ricinus communis]
11 Hb_153457_010 0.0980390021 - - Miraculin precursor, putative [Ricinus communis]
12 Hb_050898_020 0.1052848908 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
13 Hb_001053_010 0.1071433426 - - PREDICTED: polygalacturonase-like [Jatropha curcas]
14 Hb_000772_070 0.1081656154 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
15 Hb_028008_010 0.1100325009 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
16 Hb_005614_040 0.1108115042 - - unnamed protein product [Coffea canephora]
17 Hb_185391_010 0.1134160102 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
18 Hb_000021_090 0.1169175275 - - -
19 Hb_000059_100 0.1176334455 - - Basic blue protein, putative [Ricinus communis]
20 Hb_025490_030 0.1244789834 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]

Gene co-expression network

sample Hb_007320_040 Hb_007320_040 Hb_177880_010 Hb_177880_010 Hb_007320_040--Hb_177880_010 Hb_004834_020 Hb_004834_020 Hb_007320_040--Hb_004834_020 Hb_002966_030 Hb_002966_030 Hb_007320_040--Hb_002966_030 Hb_126535_010 Hb_126535_010 Hb_007320_040--Hb_126535_010 Hb_124247_030 Hb_124247_030 Hb_007320_040--Hb_124247_030 Hb_002747_010 Hb_002747_010 Hb_007320_040--Hb_002747_010 Hb_177880_010--Hb_004834_020 Hb_177880_010--Hb_126535_010 Hb_177880_010--Hb_124247_030 Hb_175167_020 Hb_175167_020 Hb_177880_010--Hb_175167_020 Hb_177880_010--Hb_002966_030 Hb_004834_020--Hb_126535_010 Hb_004834_020--Hb_124247_030 Hb_004834_020--Hb_175167_020 Hb_004834_020--Hb_002966_030 Hb_002966_030--Hb_002747_010 Hb_153457_010 Hb_153457_010 Hb_002966_030--Hb_153457_010 Hb_002966_030--Hb_175167_020 Hb_012779_010 Hb_012779_010 Hb_002966_030--Hb_012779_010 Hb_126535_010--Hb_175167_020 Hb_126535_010--Hb_124247_030 Hb_011161_060 Hb_011161_060 Hb_126535_010--Hb_011161_060 Hb_025490_030 Hb_025490_030 Hb_124247_030--Hb_025490_030 Hb_000021_090 Hb_000021_090 Hb_124247_030--Hb_000021_090 Hb_002747_010--Hb_153457_010 Hb_002747_010--Hb_012779_010 Hb_002747_010--Hb_175167_020 Hb_000513_100 Hb_000513_100 Hb_002747_010--Hb_000513_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0154878 0.0351812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.344193 0

CAGE analysis