Hb_007328_020

Information

Type -
Description -
Location Contig7328: 7252-9343
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56144: 8337-8510 , PASA_asmbl_56145: 8628-9193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007328_020 0.0 - - -
2 Hb_000563_370 0.0007968476 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
3 Hb_000215_380 0.0013628534 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
4 Hb_044724_020 0.0124875521 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
5 Hb_106595_010 0.0243276536 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
6 Hb_064583_010 0.0279353959 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
7 Hb_007264_050 0.0289026827 - - -
8 Hb_128894_010 0.0395714382 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_099085_010 0.0431444507 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_034558_010 0.0552350247 - - -
11 Hb_001766_090 0.0765875419 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
12 Hb_030312_060 0.0807230548 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
13 Hb_005050_010 0.0879016374 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
14 Hb_007658_030 0.0933789901 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
15 Hb_001796_010 0.0936516182 - - purine transporter, putative [Ricinus communis]
16 Hb_030593_010 0.0972299592 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
17 Hb_000016_290 0.0993932395 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_000484_050 0.100532012 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
19 Hb_000979_270 0.1027875625 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
20 Hb_018609_010 0.10637043 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007328_020 Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_007328_020--Hb_000563_370 Hb_000215_380 Hb_000215_380 Hb_007328_020--Hb_000215_380 Hb_044724_020 Hb_044724_020 Hb_007328_020--Hb_044724_020 Hb_106595_010 Hb_106595_010 Hb_007328_020--Hb_106595_010 Hb_064583_010 Hb_064583_010 Hb_007328_020--Hb_064583_010 Hb_007264_050 Hb_007264_050 Hb_007328_020--Hb_007264_050 Hb_000563_370--Hb_000215_380 Hb_000563_370--Hb_044724_020 Hb_000563_370--Hb_106595_010 Hb_000563_370--Hb_064583_010 Hb_000563_370--Hb_007264_050 Hb_000215_380--Hb_044724_020 Hb_000215_380--Hb_106595_010 Hb_000215_380--Hb_007264_050 Hb_000215_380--Hb_064583_010 Hb_044724_020--Hb_106595_010 Hb_128894_010 Hb_128894_010 Hb_044724_020--Hb_128894_010 Hb_044724_020--Hb_007264_050 Hb_106595_010--Hb_128894_010 Hb_034558_010 Hb_034558_010 Hb_106595_010--Hb_034558_010 Hb_099085_010 Hb_099085_010 Hb_064583_010--Hb_099085_010 Hb_064583_010--Hb_044724_020 Hb_064583_010--Hb_007264_050 Hb_007264_050--Hb_106595_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.75207 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.021442 0

CAGE analysis