Hb_007333_030

Information

Type -
Description -
Location Contig7333: 12708-13215
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007333_030 0.0 - - -
2 Hb_104812_010 0.1434557683 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
3 Hb_001221_140 0.1740027967 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000732_170 0.1834791343 - - PREDICTED: putative PAP-specific phosphatase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_003059_010 0.1849757026 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
6 Hb_000574_360 0.1960713407 - - PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Vitis vinifera]
7 Hb_000077_220 0.1989911123 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
8 Hb_003097_080 0.2055018843 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
9 Hb_013818_030 0.209466164 - - conserved hypothetical protein [Ricinus communis]
10 Hb_024404_010 0.2096888771 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
11 Hb_000260_690 0.2128008287 - - disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
12 Hb_001440_040 0.2130130788 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
13 Hb_000284_100 0.213827412 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
14 Hb_004117_100 0.2140988217 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
15 Hb_105641_010 0.2144020632 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
16 Hb_000115_160 0.2168968973 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
17 Hb_028872_170 0.2180500593 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000465_170 0.2195380605 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
19 Hb_006083_060 0.2213298093 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
20 Hb_002249_160 0.2228324065 - - -

Gene co-expression network

sample Hb_007333_030 Hb_007333_030 Hb_104812_010 Hb_104812_010 Hb_007333_030--Hb_104812_010 Hb_001221_140 Hb_001221_140 Hb_007333_030--Hb_001221_140 Hb_000732_170 Hb_000732_170 Hb_007333_030--Hb_000732_170 Hb_003059_010 Hb_003059_010 Hb_007333_030--Hb_003059_010 Hb_000574_360 Hb_000574_360 Hb_007333_030--Hb_000574_360 Hb_000077_220 Hb_000077_220 Hb_007333_030--Hb_000077_220 Hb_004117_100 Hb_004117_100 Hb_104812_010--Hb_004117_100 Hb_000883_030 Hb_000883_030 Hb_104812_010--Hb_000883_030 Hb_000983_160 Hb_000983_160 Hb_104812_010--Hb_000983_160 Hb_024404_010 Hb_024404_010 Hb_104812_010--Hb_024404_010 Hb_135611_010 Hb_135611_010 Hb_104812_010--Hb_135611_010 Hb_003939_040 Hb_003939_040 Hb_001221_140--Hb_003939_040 Hb_007380_140 Hb_007380_140 Hb_001221_140--Hb_007380_140 Hb_001221_140--Hb_000077_220 Hb_001882_130 Hb_001882_130 Hb_001221_140--Hb_001882_130 Hb_178968_050 Hb_178968_050 Hb_001221_140--Hb_178968_050 Hb_008247_020 Hb_008247_020 Hb_001221_140--Hb_008247_020 Hb_000732_170--Hb_000077_220 Hb_000284_100 Hb_000284_100 Hb_000732_170--Hb_000284_100 Hb_003471_020 Hb_003471_020 Hb_000732_170--Hb_003471_020 Hb_004770_050 Hb_004770_050 Hb_000732_170--Hb_004770_050 Hb_007456_040 Hb_007456_040 Hb_000732_170--Hb_007456_040 Hb_063943_010 Hb_063943_010 Hb_003059_010--Hb_063943_010 Hb_003124_030 Hb_003124_030 Hb_003059_010--Hb_003124_030 Hb_003059_010--Hb_001221_140 Hb_003059_010--Hb_000077_220 Hb_002851_080 Hb_002851_080 Hb_003059_010--Hb_002851_080 Hb_004884_010 Hb_004884_010 Hb_000574_360--Hb_004884_010 Hb_000574_360--Hb_002851_080 Hb_006787_060 Hb_006787_060 Hb_000574_360--Hb_006787_060 Hb_002022_070 Hb_002022_070 Hb_000574_360--Hb_002022_070 Hb_003929_140 Hb_003929_140 Hb_000574_360--Hb_003929_140 Hb_001440_040 Hb_001440_040 Hb_000574_360--Hb_001440_040 Hb_002814_060 Hb_002814_060 Hb_000077_220--Hb_002814_060 Hb_143960_010 Hb_143960_010 Hb_000077_220--Hb_143960_010 Hb_000599_170 Hb_000599_170 Hb_000077_220--Hb_000599_170 Hb_001508_020 Hb_001508_020 Hb_000077_220--Hb_001508_020 Hb_000106_020 Hb_000106_020 Hb_000077_220--Hb_000106_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.95034 4.27919 9.11219 3.84123 13.2775 9.12245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.275999 9.14987 5.73925 4.32575

CAGE analysis