Hb_007336_010

Information

Type -
Description -
Location Contig7336: 26657-29427
Sequence    

Annotation

kegg
ID rcu:RCOM_1589320
description skip-2, putative
nr
ID XP_012068294.1
description PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
swissprot
ID Q9C626
description F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1
trembl
ID A0A067LC82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16096 PE=4 SV=1
Gene Ontology
ID GO:0004842
description f-box protein at1g47056-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56166: 26260-26449 , PASA_asmbl_56167: 26509-28426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007336_010 0.0 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
2 Hb_001492_020 0.0739916814 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
3 Hb_002235_170 0.0760219538 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
4 Hb_001205_240 0.0773513205 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
5 Hb_000363_240 0.0846967789 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
6 Hb_000327_270 0.0864429885 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
7 Hb_001511_240 0.0879506665 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
8 Hb_002739_020 0.0883073735 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
9 Hb_000028_370 0.0883237746 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
10 Hb_010519_050 0.0896034159 - - galactokinase, putative [Ricinus communis]
11 Hb_028962_020 0.090280577 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
12 Hb_000590_050 0.0905344117 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
13 Hb_001674_030 0.0920401205 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
14 Hb_002213_070 0.0921560593 - - epsilon-adaptin family protein [Populus trichocarpa]
15 Hb_005396_150 0.0924798099 - - protein binding protein, putative [Ricinus communis]
16 Hb_002026_210 0.0931793878 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
17 Hb_003680_120 0.0932534768 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
18 Hb_105328_020 0.0935509862 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
19 Hb_004143_040 0.0935723 - - argininosuccinate lyase, putative [Ricinus communis]
20 Hb_002685_110 0.0941066279 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]

Gene co-expression network

sample Hb_007336_010 Hb_007336_010 Hb_001492_020 Hb_001492_020 Hb_007336_010--Hb_001492_020 Hb_002235_170 Hb_002235_170 Hb_007336_010--Hb_002235_170 Hb_001205_240 Hb_001205_240 Hb_007336_010--Hb_001205_240 Hb_000363_240 Hb_000363_240 Hb_007336_010--Hb_000363_240 Hb_000327_270 Hb_000327_270 Hb_007336_010--Hb_000327_270 Hb_001511_240 Hb_001511_240 Hb_007336_010--Hb_001511_240 Hb_001492_020--Hb_002235_170 Hb_002213_070 Hb_002213_070 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_000120_060 Hb_000120_060 Hb_001492_020--Hb_000120_060 Hb_001314_010 Hb_001314_010 Hb_001492_020--Hb_001314_010 Hb_002235_170--Hb_001314_010 Hb_105328_020 Hb_105328_020 Hb_002235_170--Hb_105328_020 Hb_000127_040 Hb_000127_040 Hb_002235_170--Hb_000127_040 Hb_000862_030 Hb_000862_030 Hb_002235_170--Hb_000862_030 Hb_002235_170--Hb_002213_070 Hb_000028_370 Hb_000028_370 Hb_001205_240--Hb_000028_370 Hb_003761_010 Hb_003761_010 Hb_001205_240--Hb_003761_010 Hb_008725_230 Hb_008725_230 Hb_001205_240--Hb_008725_230 Hb_002205_110 Hb_002205_110 Hb_001205_240--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060 Hb_003504_030 Hb_003504_030 Hb_000363_240--Hb_003504_030 Hb_001329_140 Hb_001329_140 Hb_000363_240--Hb_001329_140 Hb_001674_030 Hb_001674_030 Hb_000363_240--Hb_001674_030 Hb_003747_100 Hb_003747_100 Hb_000363_240--Hb_003747_100 Hb_007508_080 Hb_007508_080 Hb_000363_240--Hb_007508_080 Hb_000590_050 Hb_000590_050 Hb_000327_270--Hb_000590_050 Hb_003680_120 Hb_003680_120 Hb_000327_270--Hb_003680_120 Hb_000327_270--Hb_003504_030 Hb_000708_030 Hb_000708_030 Hb_000327_270--Hb_000708_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060 Hb_007445_010 Hb_007445_010 Hb_001511_240--Hb_007445_010 Hb_006373_010 Hb_006373_010 Hb_001511_240--Hb_006373_010 Hb_009193_120 Hb_009193_120 Hb_001511_240--Hb_009193_120 Hb_007083_030 Hb_007083_030 Hb_001511_240--Hb_007083_030 Hb_004452_110 Hb_004452_110 Hb_001511_240--Hb_004452_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.723 34.0613 16.8113 38.805 17.6323 33.1657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.4182 18.8158 23.7949 27.7748 23.2656

CAGE analysis