Hb_007336_020

Information

Type -
Description -
Location Contig7336: 31457-35464
Sequence    

Annotation

kegg
ID rcu:RCOM_1589330
description Mannose-P-dolichol utilization defect 1 protein, putative
nr
ID XP_002510166.1
description Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
swissprot
ID Q8VY63
description Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thaliana GN=At4g07390 PE=2 SV=1
trembl
ID B9R773
description Mannose-P-dolichol utilization defect 1 protein, putative OS=Ricinus communis GN=RCOM_1589330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56168: 31501-35419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007336_020 0.0 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
2 Hb_007590_080 0.0531967968 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
3 Hb_002475_160 0.0621672727 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
4 Hb_000322_100 0.0632433097 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
5 Hb_011942_080 0.0637096354 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
6 Hb_001369_180 0.0643304347 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
7 Hb_008253_010 0.0646831699 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
8 Hb_029920_050 0.0750423598 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
9 Hb_008695_120 0.075220935 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
10 Hb_033153_050 0.0752919864 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
11 Hb_007894_140 0.0761836806 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
12 Hb_009265_080 0.0766768532 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_000645_050 0.0794142856 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
14 Hb_031939_010 0.0798971452 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
15 Hb_008803_090 0.0816663396 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
16 Hb_002007_350 0.0825199667 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
17 Hb_004678_060 0.0831926641 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
18 Hb_007632_020 0.0833047471 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
19 Hb_164010_060 0.0837444368 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
20 Hb_011609_080 0.0843297565 - - uv excision repair protein rad23, putative [Ricinus communis]

Gene co-expression network

sample Hb_007336_020 Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_007336_020--Hb_007590_080 Hb_002475_160 Hb_002475_160 Hb_007336_020--Hb_002475_160 Hb_000322_100 Hb_000322_100 Hb_007336_020--Hb_000322_100 Hb_011942_080 Hb_011942_080 Hb_007336_020--Hb_011942_080 Hb_001369_180 Hb_001369_180 Hb_007336_020--Hb_001369_180 Hb_008253_010 Hb_008253_010 Hb_007336_020--Hb_008253_010 Hb_002007_350 Hb_002007_350 Hb_007590_080--Hb_002007_350 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_007590_080--Hb_008253_010 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_000803_300 Hb_000803_300 Hb_007590_080--Hb_000803_300 Hb_007643_050 Hb_007643_050 Hb_002475_160--Hb_007643_050 Hb_002475_160--Hb_007590_080 Hb_001158_220 Hb_001158_220 Hb_002475_160--Hb_001158_220 Hb_000645_150 Hb_000645_150 Hb_002475_160--Hb_000645_150 Hb_002475_160--Hb_011942_080 Hb_000034_050 Hb_000034_050 Hb_000322_100--Hb_000034_050 Hb_008695_120 Hb_008695_120 Hb_000322_100--Hb_008695_120 Hb_008864_110 Hb_008864_110 Hb_000322_100--Hb_008864_110 Hb_031091_010 Hb_031091_010 Hb_000322_100--Hb_031091_010 Hb_006951_020 Hb_006951_020 Hb_000322_100--Hb_006951_020 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_003467_010 Hb_003467_010 Hb_011942_080--Hb_003467_010 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_003030_070 Hb_003030_070 Hb_001369_180--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_001369_180--Hb_007218_080 Hb_000230_560 Hb_000230_560 Hb_001369_180--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_001369_180--Hb_002495_040 Hb_004310_130 Hb_004310_130 Hb_001369_180--Hb_004310_130 Hb_009265_080 Hb_009265_080 Hb_008253_010--Hb_009265_080 Hb_008253_010--Hb_002007_350 Hb_004678_060 Hb_004678_060 Hb_008253_010--Hb_004678_060 Hb_134364_010 Hb_134364_010 Hb_008253_010--Hb_134364_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.308 53.1858 43.4613 49.2658 94.6633 108.135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.3479 52.4382 46.0769 36.6503 27.9586

CAGE analysis