Hb_007342_020

Information

Type -
Description -
Location Contig7342: 18461-20190
Sequence    

Annotation

kegg
ID rcu:RCOM_0823640
description Ent-kaurene synthase B, chloroplast precursor, putative (EC:4.2.3.19)
nr
ID XP_002525842.1
description Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q0JA81
description Ent-kaurene synthase-like 2 OS=Oryza sativa subsp. japonica GN=KSL2 PE=2 SV=2
trembl
ID B9SIM3
description Ent-kaurene synthase B, chloroplast, putative OS=Ricinus communis GN=RCOM_0823640 PE=4 SV=1
Gene Ontology
ID GO:0016829
description ent-kaurene synthase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007342_020 0.0 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
2 Hb_115007_010 0.0741656149 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000537_120 0.0876900023 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
4 Hb_064398_010 0.0888337715 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001114_220 0.0941837804 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
6 Hb_000487_170 0.108947896 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_000483_020 0.1200077149 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
8 Hb_001114_290 0.1245619785 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002900_020 0.1246942115 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
10 Hb_173102_010 0.1257415418 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
11 Hb_005747_040 0.1261280363 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
12 Hb_106528_010 0.126372763 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
13 Hb_001141_170 0.1278216711 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
14 Hb_002551_010 0.1283438191 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002997_010 0.1292687696 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
16 Hb_005747_020 0.1306054805 - - bacterial-induced peroxidase [Gossypium schwendimanii]
17 Hb_169426_010 0.1311655616 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_005780_010 0.1312566291 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
19 Hb_000264_250 0.1313587912 - - thioredoxin family protein [Arabidopsis thaliana]
20 Hb_180483_010 0.1314403207 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_007342_020 Hb_007342_020 Hb_115007_010 Hb_115007_010 Hb_007342_020--Hb_115007_010 Hb_000537_120 Hb_000537_120 Hb_007342_020--Hb_000537_120 Hb_064398_010 Hb_064398_010 Hb_007342_020--Hb_064398_010 Hb_001114_220 Hb_001114_220 Hb_007342_020--Hb_001114_220 Hb_000487_170 Hb_000487_170 Hb_007342_020--Hb_000487_170 Hb_000483_020 Hb_000483_020 Hb_007342_020--Hb_000483_020 Hb_115007_010--Hb_000537_120 Hb_000120_700 Hb_000120_700 Hb_115007_010--Hb_000120_700 Hb_115007_010--Hb_000483_020 Hb_115007_010--Hb_001114_220 Hb_115007_010--Hb_064398_010 Hb_000537_120--Hb_001114_220 Hb_122025_010 Hb_122025_010 Hb_000537_120--Hb_122025_010 Hb_000563_070 Hb_000563_070 Hb_000537_120--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000537_120--Hb_000264_250 Hb_002551_010 Hb_002551_010 Hb_000537_120--Hb_002551_010 Hb_004592_020 Hb_004592_020 Hb_000537_120--Hb_004592_020 Hb_010712_020 Hb_010712_020 Hb_064398_010--Hb_010712_020 Hb_001863_290 Hb_001863_290 Hb_064398_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_064398_010--Hb_001442_080 Hb_064398_010--Hb_000487_170 Hb_001141_170 Hb_001141_170 Hb_064398_010--Hb_001141_170 Hb_107258_010 Hb_107258_010 Hb_064398_010--Hb_107258_010 Hb_001114_220--Hb_002551_010 Hb_001114_220--Hb_000264_250 Hb_106528_010 Hb_106528_010 Hb_001114_220--Hb_106528_010 Hb_005747_040 Hb_005747_040 Hb_001114_220--Hb_005747_040 Hb_001114_220--Hb_000563_070 Hb_000487_170--Hb_010712_020 Hb_000411_060 Hb_000411_060 Hb_000487_170--Hb_000411_060 Hb_000487_170--Hb_001141_170 Hb_002311_050 Hb_002311_050 Hb_000487_170--Hb_002311_050 Hb_002900_020 Hb_002900_020 Hb_000483_020--Hb_002900_020 Hb_000483_020--Hb_004592_020 Hb_000488_040 Hb_000488_040 Hb_000483_020--Hb_000488_040 Hb_000483_020--Hb_001442_080 Hb_032717_030 Hb_032717_030 Hb_000483_020--Hb_032717_030 Hb_178389_020 Hb_178389_020 Hb_000483_020--Hb_178389_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.3084 0.0194917 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.30008 0.284671

CAGE analysis