Hb_007348_030

Information

Type -
Description -
Location Contig7348: 49015-52607
Sequence    

Annotation

kegg
ID pop:POPTR_0001s45300g
description POPTRDRAFT_550449; hypothetical protein
nr
ID XP_012086626.1
description PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20375 PE=4 SV=1
Gene Ontology
ID GO:0008233
description ring fyve phd zinc finger superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56174: 51250-52081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007348_030 0.0 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
2 Hb_000244_240 0.0756983817 - - ATP binding protein, putative [Ricinus communis]
3 Hb_101151_020 0.0865944575 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000365_060 0.0929624821 - - 5'->3' exoribonuclease, putative [Ricinus communis]
5 Hb_000120_510 0.0946515582 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
6 Hb_001278_060 0.0951868426 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_001301_210 0.0965687424 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
8 Hb_001396_290 0.0974168661 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
9 Hb_001907_060 0.0983162729 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
10 Hb_006829_090 0.0990204943 - - PREDICTED: protein MOS2 [Jatropha curcas]
11 Hb_005000_270 0.0997957078 - - unnamed protein product [Vitis vinifera]
12 Hb_006588_050 0.1002276281 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
13 Hb_013753_010 0.100921002 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
14 Hb_005129_050 0.1016329657 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
15 Hb_031069_020 0.1044918552 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
16 Hb_004037_030 0.1046385135 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
17 Hb_002105_080 0.1048989212 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_007904_180 0.1056943657 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
19 Hb_078477_040 0.1058943876 - - nuclear movement protein nudc, putative [Ricinus communis]
20 Hb_002374_150 0.1060178341 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007348_030 Hb_007348_030 Hb_000244_240 Hb_000244_240 Hb_007348_030--Hb_000244_240 Hb_101151_020 Hb_101151_020 Hb_007348_030--Hb_101151_020 Hb_000365_060 Hb_000365_060 Hb_007348_030--Hb_000365_060 Hb_000120_510 Hb_000120_510 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_001301_210 Hb_001301_210 Hb_007348_030--Hb_001301_210 Hb_002159_040 Hb_002159_040 Hb_000244_240--Hb_002159_040 Hb_000244_240--Hb_001301_210 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000244_240--Hb_000120_510 Hb_000230_370 Hb_000230_370 Hb_000244_240--Hb_000230_370 Hb_000016_280 Hb_000016_280 Hb_101151_020--Hb_000016_280 Hb_000890_220 Hb_000890_220 Hb_101151_020--Hb_000890_220 Hb_013753_010 Hb_013753_010 Hb_101151_020--Hb_013753_010 Hb_000779_040 Hb_000779_040 Hb_101151_020--Hb_000779_040 Hb_012760_200 Hb_012760_200 Hb_101151_020--Hb_012760_200 Hb_005843_040 Hb_005843_040 Hb_000365_060--Hb_005843_040 Hb_002105_080 Hb_002105_080 Hb_000365_060--Hb_002105_080 Hb_007904_180 Hb_007904_180 Hb_000365_060--Hb_007904_180 Hb_000365_060--Hb_013753_010 Hb_003866_020 Hb_003866_020 Hb_000365_060--Hb_003866_020 Hb_001396_290 Hb_001396_290 Hb_000120_510--Hb_001396_290 Hb_000120_510--Hb_001301_210 Hb_006829_090 Hb_006829_090 Hb_000120_510--Hb_006829_090 Hb_000331_190 Hb_000331_190 Hb_000120_510--Hb_000331_190 Hb_000343_210 Hb_000343_210 Hb_000120_510--Hb_000343_210 Hb_006002_030 Hb_006002_030 Hb_001278_060--Hb_006002_030 Hb_007668_020 Hb_007668_020 Hb_001278_060--Hb_007668_020 Hb_000213_070 Hb_000213_070 Hb_001278_060--Hb_000213_070 Hb_005129_050 Hb_005129_050 Hb_001278_060--Hb_005129_050 Hb_001433_190 Hb_001433_190 Hb_001278_060--Hb_001433_190 Hb_078477_040 Hb_078477_040 Hb_001278_060--Hb_078477_040 Hb_001301_210--Hb_005129_050 Hb_002883_010 Hb_002883_010 Hb_001301_210--Hb_002883_010 Hb_001301_210--Hb_000230_370 Hb_001301_210--Hb_001396_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.0168 27.2193 8.90722 6.91602 44.5735 71.5004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.85 6.86798 9.42291 11.6026 8.45758

CAGE analysis