Hb_007356_010

Information

Type -
Description -
Location Contig7356: 502-4298
Sequence    

Annotation

kegg
ID pop:POPTR_0008s219702
description hypothetical protein
nr
ID AAN62346.1
description CTV.19 [Citrus trifoliata]
swissprot
ID -
description -
trembl
ID Q8H6Q9
description CTV.19 OS=Poncirus trifoliata GN=CTV.19 PE=4 SV=1
Gene Ontology
ID GO:0046872
description AF506028_13CTV.19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007356_010 0.0 - - CTV.19 [Citrus trifoliata]
2 Hb_163132_010 0.0042102184 - - -
3 Hb_007290_020 0.0053114054 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
4 Hb_068804_060 0.0054590271 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
5 Hb_000300_140 0.0112407077 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
6 Hb_033312_110 0.0594241906 - - -
7 Hb_004907_030 0.0837421992 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
8 Hb_000671_040 0.1354096179 - - -
9 Hb_013040_010 0.1430982541 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
10 Hb_001660_140 0.164845394 - - -
11 Hb_094132_010 0.1678242932 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
12 Hb_005723_070 0.1680667274 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
13 Hb_182507_010 0.1681761545 - - -
14 Hb_000193_030 0.180540072 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
15 Hb_081815_010 0.1864137654 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
16 Hb_082195_010 0.1893640391 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
17 Hb_002972_060 0.1912169094 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_000270_540 0.1955033671 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
19 Hb_000876_010 0.2088482457 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
20 Hb_103093_010 0.2098105194 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]

Gene co-expression network

sample Hb_007356_010 Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_007356_010--Hb_163132_010 Hb_007290_020 Hb_007290_020 Hb_007356_010--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_007356_010--Hb_068804_060 Hb_000300_140 Hb_000300_140 Hb_007356_010--Hb_000300_140 Hb_033312_110 Hb_033312_110 Hb_007356_010--Hb_033312_110 Hb_004907_030 Hb_004907_030 Hb_007356_010--Hb_004907_030 Hb_163132_010--Hb_007290_020 Hb_163132_010--Hb_068804_060 Hb_163132_010--Hb_000300_140 Hb_163132_010--Hb_033312_110 Hb_163132_010--Hb_004907_030 Hb_007290_020--Hb_068804_060 Hb_007290_020--Hb_000300_140 Hb_007290_020--Hb_033312_110 Hb_007290_020--Hb_004907_030 Hb_068804_060--Hb_000300_140 Hb_068804_060--Hb_033312_110 Hb_068804_060--Hb_004907_030 Hb_000300_140--Hb_033312_110 Hb_000300_140--Hb_004907_030 Hb_033312_110--Hb_004907_030 Hb_013040_010 Hb_013040_010 Hb_004907_030--Hb_013040_010 Hb_001660_140 Hb_001660_140 Hb_004907_030--Hb_001660_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0138789 0 0.0191807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis