Hb_007364_010

Information

Type -
Description -
Location Contig7364: 635-23192
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13300g
description hypothetical protein
nr
ID XP_012078856.1
description PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
swissprot
ID Q9Y5Q9
description General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1
trembl
ID A0A067K8M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13387 PE=4 SV=1
Gene Ontology
ID GO:0009987
description general transcription factor 3c polypeptide 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56208: 653-1152 , PASA_asmbl_56209: 1230-20204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007364_010 0.0 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
2 Hb_000977_180 0.0762670862 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
3 Hb_001789_210 0.0797657804 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
4 Hb_004934_090 0.083621431 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
5 Hb_000703_080 0.0850643934 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
6 Hb_010710_110 0.0856756949 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
7 Hb_025557_010 0.0869003383 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
8 Hb_005977_090 0.0872444661 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
9 Hb_007586_030 0.0874346628 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
10 Hb_005214_160 0.0884881788 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
11 Hb_005237_010 0.0886022958 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
12 Hb_000661_050 0.0894863812 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
13 Hb_006649_060 0.0895167764 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001736_040 0.0936663874 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
15 Hb_000284_210 0.0938714686 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000808_180 0.0943283286 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
17 Hb_002150_030 0.0944962036 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
18 Hb_009393_050 0.0945700781 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
19 Hb_000152_820 0.0946833267 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
20 Hb_004452_100 0.0948229368 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]

Gene co-expression network

sample Hb_007364_010 Hb_007364_010 Hb_000977_180 Hb_000977_180 Hb_007364_010--Hb_000977_180 Hb_001789_210 Hb_001789_210 Hb_007364_010--Hb_001789_210 Hb_004934_090 Hb_004934_090 Hb_007364_010--Hb_004934_090 Hb_000703_080 Hb_000703_080 Hb_007364_010--Hb_000703_080 Hb_010710_110 Hb_010710_110 Hb_007364_010--Hb_010710_110 Hb_025557_010 Hb_025557_010 Hb_007364_010--Hb_025557_010 Hb_007586_030 Hb_007586_030 Hb_000977_180--Hb_007586_030 Hb_002150_030 Hb_002150_030 Hb_000977_180--Hb_002150_030 Hb_123777_030 Hb_123777_030 Hb_000977_180--Hb_123777_030 Hb_005214_160 Hb_005214_160 Hb_000977_180--Hb_005214_160 Hb_005977_090 Hb_005977_090 Hb_000977_180--Hb_005977_090 Hb_002798_040 Hb_002798_040 Hb_001789_210--Hb_002798_040 Hb_001638_250 Hb_001638_250 Hb_001789_210--Hb_001638_250 Hb_001789_210--Hb_004934_090 Hb_001736_040 Hb_001736_040 Hb_001789_210--Hb_001736_040 Hb_006649_060 Hb_006649_060 Hb_001789_210--Hb_006649_060 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_000284_210 Hb_000284_210 Hb_000703_080--Hb_000284_210 Hb_000703_080--Hb_002097_090 Hb_000703_080--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_000703_080--Hb_003728_030 Hb_001454_060 Hb_001454_060 Hb_000703_080--Hb_001454_060 Hb_000390_060 Hb_000390_060 Hb_000703_080--Hb_000390_060 Hb_000009_550 Hb_000009_550 Hb_010710_110--Hb_000009_550 Hb_005307_030 Hb_005307_030 Hb_010710_110--Hb_005307_030 Hb_000787_110 Hb_000787_110 Hb_010710_110--Hb_000787_110 Hb_010710_110--Hb_004934_090 Hb_000923_020 Hb_000923_020 Hb_010710_110--Hb_000923_020 Hb_001720_050 Hb_001720_050 Hb_010710_110--Hb_001720_050 Hb_000976_150 Hb_000976_150 Hb_025557_010--Hb_000976_150 Hb_025557_010--Hb_001720_050 Hb_025557_010--Hb_010710_110 Hb_003777_330 Hb_003777_330 Hb_025557_010--Hb_003777_330 Hb_001584_160 Hb_001584_160 Hb_025557_010--Hb_001584_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.5505 29.4892 5.92424 6.61791 55.8985 54.0373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.1679 25.9631 36.0256 17.6064 18.5087

CAGE analysis