Hb_007380_040

Information

Type -
Description -
Location Contig7380: 39504-42977
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002517677.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56230: 42759-42973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007380_040 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_004657_030 0.1570426116 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
3 Hb_000406_060 0.1614689908 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
4 Hb_000106_020 0.1777653887 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
5 Hb_003471_020 0.1811081382 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
6 Hb_000334_180 0.1814882308 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
7 Hb_004040_040 0.1885423959 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
8 Hb_143960_010 0.1944833471 - - -
9 Hb_003640_030 0.1968738457 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
10 Hb_002477_220 0.1974586526 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
11 Hb_000362_110 0.2000754569 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
12 Hb_150346_010 0.2030668446 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_000442_130 0.2034095079 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001351_040 0.2053942833 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
15 Hb_098315_090 0.2057956105 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
16 Hb_002370_030 0.210047075 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
17 Hb_000723_010 0.210661663 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000175_120 0.2108610503 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
19 Hb_054885_020 0.2118178876 - - -
20 Hb_001091_030 0.2124187876 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]

Gene co-expression network

sample Hb_007380_040 Hb_007380_040 Hb_004657_030 Hb_004657_030 Hb_007380_040--Hb_004657_030 Hb_000406_060 Hb_000406_060 Hb_007380_040--Hb_000406_060 Hb_000106_020 Hb_000106_020 Hb_007380_040--Hb_000106_020 Hb_003471_020 Hb_003471_020 Hb_007380_040--Hb_003471_020 Hb_000334_180 Hb_000334_180 Hb_007380_040--Hb_000334_180 Hb_004040_040 Hb_004040_040 Hb_007380_040--Hb_004040_040 Hb_003058_200 Hb_003058_200 Hb_004657_030--Hb_003058_200 Hb_000723_010 Hb_000723_010 Hb_004657_030--Hb_000723_010 Hb_098315_090 Hb_098315_090 Hb_004657_030--Hb_098315_090 Hb_002072_010 Hb_002072_010 Hb_004657_030--Hb_002072_010 Hb_000244_260 Hb_000244_260 Hb_004657_030--Hb_000244_260 Hb_150346_010 Hb_150346_010 Hb_004657_030--Hb_150346_010 Hb_006829_100 Hb_006829_100 Hb_000406_060--Hb_006829_100 Hb_002374_210 Hb_002374_210 Hb_000406_060--Hb_002374_210 Hb_001006_340 Hb_001006_340 Hb_000406_060--Hb_001006_340 Hb_000406_060--Hb_000106_020 Hb_003913_110 Hb_003913_110 Hb_000406_060--Hb_003913_110 Hb_002005_080 Hb_002005_080 Hb_000406_060--Hb_002005_080 Hb_000122_080 Hb_000122_080 Hb_000106_020--Hb_000122_080 Hb_033554_020 Hb_033554_020 Hb_000106_020--Hb_033554_020 Hb_001373_160 Hb_001373_160 Hb_000106_020--Hb_001373_160 Hb_000106_020--Hb_098315_090 Hb_143960_010 Hb_143960_010 Hb_000106_020--Hb_143960_010 Hb_003471_020--Hb_004040_040 Hb_148131_010 Hb_148131_010 Hb_003471_020--Hb_148131_010 Hb_027136_010 Hb_027136_010 Hb_003471_020--Hb_027136_010 Hb_003471_020--Hb_150346_010 Hb_000424_150 Hb_000424_150 Hb_003471_020--Hb_000424_150 Hb_002814_060 Hb_002814_060 Hb_003471_020--Hb_002814_060 Hb_008778_010 Hb_008778_010 Hb_000334_180--Hb_008778_010 Hb_000566_030 Hb_000566_030 Hb_000334_180--Hb_000566_030 Hb_183443_010 Hb_183443_010 Hb_000334_180--Hb_183443_010 Hb_002035_080 Hb_002035_080 Hb_000334_180--Hb_002035_080 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_002370_030 Hb_002370_030 Hb_004040_040--Hb_002370_030 Hb_004040_040--Hb_027136_010 Hb_030736_070 Hb_030736_070 Hb_004040_040--Hb_030736_070 Hb_054885_020 Hb_054885_020 Hb_004040_040--Hb_054885_020 Hb_004040_040--Hb_150346_010 Hb_007186_020 Hb_007186_020 Hb_004040_040--Hb_007186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.686225 1.17168 0.424414 1.05107 0.784753 1.0916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0107415 0.185101 2.24022 0.688242

CAGE analysis