Hb_007380_060

Information

Type -
Description -
Location Contig7380: 79679-91774
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00280g
description hypothetical protein
nr
ID XP_006380855.1
description hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GB34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s00280g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56231: 81536-87477 , PASA_asmbl_56232: 86386-86502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007380_060 0.0 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
2 Hb_012733_030 0.0516035848 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
3 Hb_002600_150 0.0664885718 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
4 Hb_001999_310 0.0685680004 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
5 Hb_011674_020 0.0715956556 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
6 Hb_168978_030 0.0724575455 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
7 Hb_013726_090 0.0756522578 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
8 Hb_009079_030 0.0769548652 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
9 Hb_003913_070 0.0797082812 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
10 Hb_002965_090 0.0809648334 - - importin alpha, putative [Ricinus communis]
11 Hb_007390_010 0.0814771114 - - catalytic, putative [Ricinus communis]
12 Hb_000640_170 0.0835415221 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
13 Hb_000830_030 0.0836352601 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
14 Hb_000053_040 0.0844807926 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
15 Hb_003734_010 0.0854193218 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
16 Hb_000008_290 0.0855612262 - - PREDICTED: protein SAND [Jatropha curcas]
17 Hb_000613_050 0.0859905154 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
18 Hb_000138_100 0.0866021624 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
19 Hb_001500_140 0.0869839427 - - pelota, putative [Ricinus communis]
20 Hb_000592_030 0.0870829462 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_007380_060 Hb_007380_060 Hb_012733_030 Hb_012733_030 Hb_007380_060--Hb_012733_030 Hb_002600_150 Hb_002600_150 Hb_007380_060--Hb_002600_150 Hb_001999_310 Hb_001999_310 Hb_007380_060--Hb_001999_310 Hb_011674_020 Hb_011674_020 Hb_007380_060--Hb_011674_020 Hb_168978_030 Hb_168978_030 Hb_007380_060--Hb_168978_030 Hb_013726_090 Hb_013726_090 Hb_007380_060--Hb_013726_090 Hb_012733_030--Hb_002600_150 Hb_007426_110 Hb_007426_110 Hb_012733_030--Hb_007426_110 Hb_001442_040 Hb_001442_040 Hb_012733_030--Hb_001442_040 Hb_000008_290 Hb_000008_290 Hb_012733_030--Hb_000008_290 Hb_000053_040 Hb_000053_040 Hb_012733_030--Hb_000053_040 Hb_002600_150--Hb_000053_040 Hb_001357_020 Hb_001357_020 Hb_002600_150--Hb_001357_020 Hb_000138_100 Hb_000138_100 Hb_002600_150--Hb_000138_100 Hb_002600_150--Hb_013726_090 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_011674_020--Hb_013726_090 Hb_001571_050 Hb_001571_050 Hb_011674_020--Hb_001571_050 Hb_000111_320 Hb_000111_320 Hb_011674_020--Hb_000111_320 Hb_011674_020--Hb_001876_050 Hb_011674_020--Hb_001999_310 Hb_000640_170 Hb_000640_170 Hb_168978_030--Hb_000640_170 Hb_000035_470 Hb_000035_470 Hb_168978_030--Hb_000035_470 Hb_000617_180 Hb_000617_180 Hb_168978_030--Hb_000617_180 Hb_105328_020 Hb_105328_020 Hb_168978_030--Hb_105328_020 Hb_002044_150 Hb_002044_150 Hb_168978_030--Hb_002044_150 Hb_000156_010 Hb_000156_010 Hb_168978_030--Hb_000156_010 Hb_000011_060 Hb_000011_060 Hb_013726_090--Hb_000011_060 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15751 0.861065 0.991845 1.14567 0.831505 1.74467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10018 1.16293 0.986654 2.08738 1.40283

CAGE analysis