Hb_007380_110

Information

Type -
Description -
Location Contig7380: 125290-133142
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13230g
description POPTRDRAFT_253872; hypothetical protein
nr
ID KDP29026.1
description hypothetical protein JCGZ_16415 [Jatropha curcas]
swissprot
ID Q8L627
description snRNA-activating protein complex subunit OS=Arabidopsis thaliana GN=SRD2 PE=1 SV=1
trembl
ID A0A067JYI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16415 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56246: 125734-126267 , PASA_asmbl_56247: 128950-137093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007380_110 0.0 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
2 Hb_003995_010 0.149490109 - - -
3 Hb_065525_030 0.1567694476 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
4 Hb_057490_010 0.1575354003 - - PREDICTED: mannose-1-phosphate guanyltransferase alpha [Jatropha curcas]
5 Hb_005000_100 0.1593432783 - - PCI domain-containing protein 2 [Morus notabilis]
6 Hb_000814_090 0.1606956915 - - conserved hypothetical protein [Ricinus communis]
7 Hb_023327_030 0.1665873403 - - osmotin-like protein [Hevea brasiliensis]
8 Hb_000424_230 0.1679493399 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
9 Hb_003477_010 0.1682404368 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
10 Hb_004218_070 0.1684025435 - - annexin [Manihot esculenta]
11 Hb_083043_010 0.1688351603 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
12 Hb_003656_140 0.1694618596 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
13 Hb_000256_270 0.1698421354 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
14 Hb_003581_020 0.170572676 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_061908_010 0.1706017067 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
16 Hb_004881_050 0.1723835746 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
17 Hb_000122_140 0.1748330106 - - -
18 Hb_150204_010 0.177040195 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_079326_010 0.1773075866 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
20 Hb_000116_170 0.1779580711 - - hypothetical protein JCGZ_22392 [Jatropha curcas]

Gene co-expression network

sample Hb_007380_110 Hb_007380_110 Hb_003995_010 Hb_003995_010 Hb_007380_110--Hb_003995_010 Hb_065525_030 Hb_065525_030 Hb_007380_110--Hb_065525_030 Hb_057490_010 Hb_057490_010 Hb_007380_110--Hb_057490_010 Hb_005000_100 Hb_005000_100 Hb_007380_110--Hb_005000_100 Hb_000814_090 Hb_000814_090 Hb_007380_110--Hb_000814_090 Hb_023327_030 Hb_023327_030 Hb_007380_110--Hb_023327_030 Hb_173178_020 Hb_173178_020 Hb_003995_010--Hb_173178_020 Hb_003995_010--Hb_057490_010 Hb_003716_020 Hb_003716_020 Hb_003995_010--Hb_003716_020 Hb_004218_070 Hb_004218_070 Hb_003995_010--Hb_004218_070 Hb_175612_010 Hb_175612_010 Hb_003995_010--Hb_175612_010 Hb_000213_070 Hb_000213_070 Hb_003995_010--Hb_000213_070 Hb_065525_030--Hb_005000_100 Hb_004361_050 Hb_004361_050 Hb_065525_030--Hb_004361_050 Hb_004608_020 Hb_004608_020 Hb_065525_030--Hb_004608_020 Hb_004881_050 Hb_004881_050 Hb_065525_030--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_065525_030--Hb_000457_060 Hb_000248_050 Hb_000248_050 Hb_065525_030--Hb_000248_050 Hb_025048_040 Hb_025048_040 Hb_057490_010--Hb_025048_040 Hb_057490_010--Hb_000814_090 Hb_001278_060 Hb_001278_060 Hb_057490_010--Hb_001278_060 Hb_057490_010--Hb_003716_020 Hb_057490_010--Hb_000213_070 Hb_005000_100--Hb_004881_050 Hb_000152_740 Hb_000152_740 Hb_005000_100--Hb_000152_740 Hb_006913_040 Hb_006913_040 Hb_005000_100--Hb_006913_040 Hb_024990_010 Hb_024990_010 Hb_005000_100--Hb_024990_010 Hb_003581_020 Hb_003581_020 Hb_005000_100--Hb_003581_020 Hb_001221_040 Hb_001221_040 Hb_005000_100--Hb_001221_040 Hb_002725_070 Hb_002725_070 Hb_000814_090--Hb_002725_070 Hb_005635_010 Hb_005635_010 Hb_000814_090--Hb_005635_010 Hb_000814_090--Hb_006913_040 Hb_001019_170 Hb_001019_170 Hb_000814_090--Hb_001019_170 Hb_000078_100 Hb_000078_100 Hb_000814_090--Hb_000078_100 Hb_002820_040 Hb_002820_040 Hb_000814_090--Hb_002820_040 Hb_002475_050 Hb_002475_050 Hb_023327_030--Hb_002475_050 Hb_005000_270 Hb_005000_270 Hb_023327_030--Hb_005000_270 Hb_000256_270 Hb_000256_270 Hb_023327_030--Hb_000256_270 Hb_079326_010 Hb_079326_010 Hb_023327_030--Hb_079326_010 Hb_002918_070 Hb_002918_070 Hb_023327_030--Hb_002918_070 Hb_023327_030--Hb_003716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.846027 0.177454 0.149 0.503429 0.923051 1.54031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.659831 0.259254 0.14982 0.56908 0

CAGE analysis