Hb_007382_040

Information

Type -
Description -
Location Contig7382: 23115-23591
Sequence    

Annotation

kegg
ID rcu:RCOM_1078910
description hypothetical protein
nr
ID NP_001295639.1
description uncharacterized LOC105644857 [Jatropha curcas]
swissprot
ID Q9ZUZ3
description Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana GN=SAUR32 PE=2 SV=1
trembl
ID E9JFX8
description SAUR family protein OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56255: 22889-24022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007382_040 0.0 - - uncharacterized LOC105644857 [Jatropha curcas]
2 Hb_002609_100 0.1285988975 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
3 Hb_001259_030 0.1302324342 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
4 Hb_003050_090 0.1684028248 - - lupus la ribonucleoprotein, putative [Ricinus communis]
5 Hb_000613_020 0.1697911831 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
6 Hb_060437_010 0.1799532712 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
7 Hb_004254_040 0.1880744792 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
8 Hb_007809_060 0.1900520559 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
9 Hb_003859_010 0.1933883447 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_012150_070 0.1954453899 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
11 Hb_040506_010 0.1984186928 - - protein binding protein, putative [Ricinus communis]
12 Hb_001178_060 0.1998396695 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
13 Hb_017111_010 0.2025697968 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
14 Hb_000640_210 0.2066955173 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
15 Hb_030414_050 0.2071772801 - - -
16 Hb_000590_080 0.2078680919 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
17 Hb_000009_640 0.2083996503 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_12318 [Jatropha curcas]
18 Hb_002026_230 0.2089507575 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
19 Hb_001140_080 0.2137015482 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
20 Hb_002843_050 0.2157549861 - - scab resistance family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007382_040 Hb_007382_040 Hb_002609_100 Hb_002609_100 Hb_007382_040--Hb_002609_100 Hb_001259_030 Hb_001259_030 Hb_007382_040--Hb_001259_030 Hb_003050_090 Hb_003050_090 Hb_007382_040--Hb_003050_090 Hb_000613_020 Hb_000613_020 Hb_007382_040--Hb_000613_020 Hb_060437_010 Hb_060437_010 Hb_007382_040--Hb_060437_010 Hb_004254_040 Hb_004254_040 Hb_007382_040--Hb_004254_040 Hb_012150_070 Hb_012150_070 Hb_002609_100--Hb_012150_070 Hb_002026_230 Hb_002026_230 Hb_002609_100--Hb_002026_230 Hb_002609_100--Hb_000613_020 Hb_030414_050 Hb_030414_050 Hb_002609_100--Hb_030414_050 Hb_002609_100--Hb_003050_090 Hb_000640_210 Hb_000640_210 Hb_001259_030--Hb_000640_210 Hb_001259_030--Hb_060437_010 Hb_005028_010 Hb_005028_010 Hb_001259_030--Hb_005028_010 Hb_001259_030--Hb_000613_020 Hb_001140_080 Hb_001140_080 Hb_001259_030--Hb_001140_080 Hb_001259_030--Hb_003050_090 Hb_003050_090--Hb_060437_010 Hb_003050_090--Hb_001140_080 Hb_001034_020 Hb_001034_020 Hb_003050_090--Hb_001034_020 Hb_001178_060 Hb_001178_060 Hb_003050_090--Hb_001178_060 Hb_000953_140 Hb_000953_140 Hb_003050_090--Hb_000953_140 Hb_000025_750 Hb_000025_750 Hb_000613_020--Hb_000025_750 Hb_000613_020--Hb_060437_010 Hb_004032_460 Hb_004032_460 Hb_000613_020--Hb_004032_460 Hb_000613_020--Hb_005028_010 Hb_001348_140 Hb_001348_140 Hb_000613_020--Hb_001348_140 Hb_060437_010--Hb_001034_020 Hb_012760_200 Hb_012760_200 Hb_060437_010--Hb_012760_200 Hb_060437_010--Hb_001178_060 Hb_060437_010--Hb_000025_750 Hb_060437_010--Hb_000640_210 Hb_000270_400 Hb_000270_400 Hb_004254_040--Hb_000270_400 Hb_001635_220 Hb_001635_220 Hb_004254_040--Hb_001635_220 Hb_000172_610 Hb_000172_610 Hb_004254_040--Hb_000172_610 Hb_004254_040--Hb_001140_080 Hb_012807_120 Hb_012807_120 Hb_004254_040--Hb_012807_120 Hb_000009_640 Hb_000009_640 Hb_004254_040--Hb_000009_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1682.42 333.422 3.16322 32.0558 550.078 750.253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
203.529 93.6249 97.537 79.4966 5.90422

CAGE analysis