Hb_007382_050

Information

Type -
Description -
Location Contig7382: 27524-37884
Sequence    

Annotation

kegg
ID rcu:RCOM_1078800
description zinc finger protein, putative
nr
ID XP_012085902.1
description PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
swissprot
ID Q8BMD7
description MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2
trembl
ID A0A067JVM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18011 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007382_050 0.0 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
2 Hb_001433_180 0.1697767278 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
3 Hb_003623_070 0.1891524002 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_001635_050 0.2150044777 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
5 Hb_002273_080 0.2224358407 - - geranylgeranyl reductase [Monoraphidium neglectum]
6 Hb_001951_030 0.2323162979 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
7 Hb_005841_080 0.2343516445 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
8 Hb_000140_410 0.2447356665 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
9 Hb_002273_050 0.2454623129 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
10 Hb_004788_040 0.2455435696 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_140049_050 0.2480214614 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
12 Hb_000160_240 0.2522312856 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
13 Hb_020805_170 0.2536587728 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
14 Hb_002110_260 0.2545513538 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000215_410 0.2546046773 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
16 Hb_089920_010 0.260655108 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_003052_200 0.2615725863 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
18 Hb_038758_010 0.2626089046 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_004195_110 0.2644375086 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
20 Hb_000106_070 0.2675698213 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_007382_050 Hb_007382_050 Hb_001433_180 Hb_001433_180 Hb_007382_050--Hb_001433_180 Hb_003623_070 Hb_003623_070 Hb_007382_050--Hb_003623_070 Hb_001635_050 Hb_001635_050 Hb_007382_050--Hb_001635_050 Hb_002273_080 Hb_002273_080 Hb_007382_050--Hb_002273_080 Hb_001951_030 Hb_001951_030 Hb_007382_050--Hb_001951_030 Hb_005841_080 Hb_005841_080 Hb_007382_050--Hb_005841_080 Hb_031862_040 Hb_031862_040 Hb_001433_180--Hb_031862_040 Hb_001433_180--Hb_003623_070 Hb_000140_410 Hb_000140_410 Hb_001433_180--Hb_000140_410 Hb_000260_290 Hb_000260_290 Hb_001433_180--Hb_000260_290 Hb_000796_250 Hb_000796_250 Hb_001433_180--Hb_000796_250 Hb_003623_070--Hb_000140_410 Hb_001269_690 Hb_001269_690 Hb_003623_070--Hb_001269_690 Hb_004788_040 Hb_004788_040 Hb_003623_070--Hb_004788_040 Hb_001529_050 Hb_001529_050 Hb_003623_070--Hb_001529_050 Hb_003623_070--Hb_001635_050 Hb_002273_050 Hb_002273_050 Hb_003623_070--Hb_002273_050 Hb_001635_050--Hb_004788_040 Hb_002273_090 Hb_002273_090 Hb_001635_050--Hb_002273_090 Hb_002273_060 Hb_002273_060 Hb_001635_050--Hb_002273_060 Hb_001635_050--Hb_002273_080 Hb_001635_050--Hb_002273_050 Hb_002273_080--Hb_002273_050 Hb_000215_410 Hb_000215_410 Hb_002273_080--Hb_000215_410 Hb_002686_280 Hb_002686_280 Hb_002273_080--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_080--Hb_129204_060 Hb_002273_080--Hb_001269_690 Hb_001269_040 Hb_001269_040 Hb_002273_080--Hb_001269_040 Hb_005157_010 Hb_005157_010 Hb_001951_030--Hb_005157_010 Hb_007416_150 Hb_007416_150 Hb_001951_030--Hb_007416_150 Hb_000670_110 Hb_000670_110 Hb_001951_030--Hb_000670_110 Hb_011618_040 Hb_011618_040 Hb_001951_030--Hb_011618_040 Hb_089920_010 Hb_089920_010 Hb_001951_030--Hb_089920_010 Hb_008225_100 Hb_008225_100 Hb_001951_030--Hb_008225_100 Hb_005841_080--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_005841_080--Hb_000685_060 Hb_003299_010 Hb_003299_010 Hb_005841_080--Hb_003299_010 Hb_005841_080--Hb_002273_080 Hb_005841_080--Hb_000215_410 Hb_000106_070 Hb_000106_070 Hb_005841_080--Hb_000106_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0388813 0.515114 0.00581558 0.00550033 0.0220398 0.0628029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.089077 0.0700934 0.0534412 0.462075 0

CAGE analysis