Hb_007382_090

Information

Type -
Description -
Location Contig7382: 49318-51249
Sequence    

Annotation

kegg
ID rcu:RCOM_1078770
description protein binding protein, putative
nr
ID XP_002514865.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9FGH9
description Exocyst complex component EXO70B1 OS=Arabidopsis thaliana GN=EXO70B1 PE=1 SV=1
trembl
ID B9RM96
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1078770 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007382_090 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_005332_130 0.1631677768 - - Mavicyanin, putative [Ricinus communis]
3 Hb_003740_030 0.1632910564 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
4 Hb_000031_330 0.1953295501 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
5 Hb_000111_440 0.2196770633 - - -
6 Hb_003119_040 0.2228210496 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
7 Hb_005217_070 0.2237227798 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000034_150 0.2335618862 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
9 Hb_051997_010 0.2355624659 - - -
10 Hb_000663_070 0.2372390201 - - cyclin A, putative [Ricinus communis]
11 Hb_010436_080 0.2405721515 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
12 Hb_000866_100 0.2450546636 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
13 Hb_000577_050 0.2469423445 - - -
14 Hb_005599_010 0.2469523992 - - Protein MLO, putative [Ricinus communis]
15 Hb_000057_190 0.2485963041 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004154_010 0.2497585604 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
17 Hb_003226_060 0.2508378882 - - Pectinesterase-2 precursor, putative [Ricinus communis]
18 Hb_006060_010 0.2511322246 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
19 Hb_003599_060 0.2512738831 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_027445_040 0.2527551714 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]

Gene co-expression network

sample Hb_007382_090 Hb_007382_090 Hb_005332_130 Hb_005332_130 Hb_007382_090--Hb_005332_130 Hb_003740_030 Hb_003740_030 Hb_007382_090--Hb_003740_030 Hb_000031_330 Hb_000031_330 Hb_007382_090--Hb_000031_330 Hb_000111_440 Hb_000111_440 Hb_007382_090--Hb_000111_440 Hb_003119_040 Hb_003119_040 Hb_007382_090--Hb_003119_040 Hb_005217_070 Hb_005217_070 Hb_007382_090--Hb_005217_070 Hb_000808_120 Hb_000808_120 Hb_005332_130--Hb_000808_120 Hb_001775_090 Hb_001775_090 Hb_005332_130--Hb_001775_090 Hb_000577_050 Hb_000577_050 Hb_005332_130--Hb_000577_050 Hb_007894_100 Hb_007894_100 Hb_005332_130--Hb_007894_100 Hb_005332_130--Hb_003119_040 Hb_000866_100 Hb_000866_100 Hb_003740_030--Hb_000866_100 Hb_001390_040 Hb_001390_040 Hb_003740_030--Hb_001390_040 Hb_007474_020 Hb_007474_020 Hb_003740_030--Hb_007474_020 Hb_034498_010 Hb_034498_010 Hb_003740_030--Hb_034498_010 Hb_000034_150 Hb_000034_150 Hb_003740_030--Hb_000034_150 Hb_001195_210 Hb_001195_210 Hb_000031_330--Hb_001195_210 Hb_000953_080 Hb_000953_080 Hb_000031_330--Hb_000953_080 Hb_000031_330--Hb_005217_070 Hb_000031_330--Hb_003740_030 Hb_000116_200 Hb_000116_200 Hb_000031_330--Hb_000116_200 Hb_008971_030 Hb_008971_030 Hb_000111_440--Hb_008971_030 Hb_007432_010 Hb_007432_010 Hb_000111_440--Hb_007432_010 Hb_000111_440--Hb_003740_030 Hb_000111_440--Hb_005332_130 Hb_051997_010 Hb_051997_010 Hb_000111_440--Hb_051997_010 Hb_000193_060 Hb_000193_060 Hb_003119_040--Hb_000193_060 Hb_006060_010 Hb_006060_010 Hb_003119_040--Hb_006060_010 Hb_002048_100 Hb_002048_100 Hb_003119_040--Hb_002048_100 Hb_006153_010 Hb_006153_010 Hb_003119_040--Hb_006153_010 Hb_005599_010 Hb_005599_010 Hb_003119_040--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003119_040--Hb_004154_010 Hb_014549_010 Hb_014549_010 Hb_005217_070--Hb_014549_010 Hb_011826_010 Hb_011826_010 Hb_005217_070--Hb_011826_010 Hb_036602_010 Hb_036602_010 Hb_005217_070--Hb_036602_010 Hb_006721_060 Hb_006721_060 Hb_005217_070--Hb_006721_060 Hb_000163_040 Hb_000163_040 Hb_005217_070--Hb_000163_040 Hb_003489_010 Hb_003489_010 Hb_005217_070--Hb_003489_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.010317 0.0425902 0.187519 0.114107 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0369064 0 0.0220319 0

CAGE analysis