Hb_007382_120

Information

Type -
Description -
Location Contig7382: 65347-67425
Sequence    

Annotation

kegg
ID rcu:RCOM_1078730
description Delta3,5-delta2,4-dienoyl-CoA isomerase, mitochondrial precursor, putative (EC:4.2.1.17)
nr
ID XP_012085746.1
description PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
swissprot
ID O35459
description Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Mus musculus GN=Ech1 PE=1 SV=1
trembl
ID A0A067JVN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18016 PE=3 SV=1
Gene Ontology
ID GO:0005777
description delta( )-delta( )-dienoyl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56260: 65397-67393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007382_120 0.0 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
2 Hb_000120_820 0.0714019753 - - dihydrodipicolinate synthase, putative [Ricinus communis]
3 Hb_109484_010 0.0856078189 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
4 Hb_002007_150 0.0952087205 - - -
5 Hb_000008_420 0.1000665204 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
6 Hb_000490_060 0.1017348206 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
7 Hb_002915_060 0.1049545569 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
8 Hb_004781_010 0.1064788987 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
9 Hb_050847_050 0.1100541524 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
10 Hb_000521_330 0.1116721437 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009627_030 0.1121234668 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
12 Hb_000631_120 0.1130938783 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
13 Hb_000183_090 0.1138234411 - - PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
14 Hb_017387_010 0.1139607561 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
15 Hb_011360_050 0.1140843195 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
16 Hb_001221_110 0.1146564688 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
17 Hb_001862_110 0.1147048145 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
18 Hb_007017_040 0.115168075 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
19 Hb_000684_040 0.1153639086 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
20 Hb_000997_180 0.1156008844 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007382_120 Hb_007382_120 Hb_000120_820 Hb_000120_820 Hb_007382_120--Hb_000120_820 Hb_109484_010 Hb_109484_010 Hb_007382_120--Hb_109484_010 Hb_002007_150 Hb_002007_150 Hb_007382_120--Hb_002007_150 Hb_000008_420 Hb_000008_420 Hb_007382_120--Hb_000008_420 Hb_000490_060 Hb_000490_060 Hb_007382_120--Hb_000490_060 Hb_002915_060 Hb_002915_060 Hb_007382_120--Hb_002915_060 Hb_127743_010 Hb_127743_010 Hb_000120_820--Hb_127743_010 Hb_000521_330 Hb_000521_330 Hb_000120_820--Hb_000521_330 Hb_000920_300 Hb_000920_300 Hb_000120_820--Hb_000920_300 Hb_000631_120 Hb_000631_120 Hb_000120_820--Hb_000631_120 Hb_004934_050 Hb_004934_050 Hb_000120_820--Hb_004934_050 Hb_001221_110 Hb_001221_110 Hb_109484_010--Hb_001221_110 Hb_004781_010 Hb_004781_010 Hb_109484_010--Hb_004781_010 Hb_000028_370 Hb_000028_370 Hb_109484_010--Hb_000028_370 Hb_109484_010--Hb_002007_150 Hb_000215_320 Hb_000215_320 Hb_109484_010--Hb_000215_320 Hb_003849_110 Hb_003849_110 Hb_002007_150--Hb_003849_110 Hb_002007_150--Hb_000521_330 Hb_003906_200 Hb_003906_200 Hb_002007_150--Hb_003906_200 Hb_003464_090 Hb_003464_090 Hb_002007_150--Hb_003464_090 Hb_000347_250 Hb_000347_250 Hb_002007_150--Hb_000347_250 Hb_000868_090 Hb_000868_090 Hb_002007_150--Hb_000868_090 Hb_000088_270 Hb_000088_270 Hb_000008_420--Hb_000088_270 Hb_006588_060 Hb_006588_060 Hb_000008_420--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_000008_420--Hb_012092_050 Hb_007257_060 Hb_007257_060 Hb_000008_420--Hb_007257_060 Hb_007423_050 Hb_007423_050 Hb_000008_420--Hb_007423_050 Hb_000008_420--Hb_000920_300 Hb_000684_040 Hb_000684_040 Hb_000490_060--Hb_000684_040 Hb_003528_050 Hb_003528_050 Hb_000490_060--Hb_003528_050 Hb_020178_040 Hb_020178_040 Hb_000490_060--Hb_020178_040 Hb_006970_050 Hb_006970_050 Hb_000490_060--Hb_006970_050 Hb_003228_110 Hb_003228_110 Hb_000490_060--Hb_003228_110 Hb_050847_050 Hb_050847_050 Hb_000490_060--Hb_050847_050 Hb_001328_080 Hb_001328_080 Hb_002915_060--Hb_001328_080 Hb_007839_020 Hb_007839_020 Hb_002915_060--Hb_007839_020 Hb_011360_050 Hb_011360_050 Hb_002915_060--Hb_011360_050 Hb_005215_020 Hb_005215_020 Hb_002915_060--Hb_005215_020 Hb_023344_150 Hb_023344_150 Hb_002915_060--Hb_023344_150 Hb_002982_020 Hb_002982_020 Hb_002915_060--Hb_002982_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2454 60.1528 23.9678 37.4668 17.5765 15.414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2424 44.5517 18.2397 40.9124 25.371

CAGE analysis