Hb_007382_130

Information

Type -
Description -
Location Contig7382: 69369-72186
Sequence    

Annotation

kegg
ID rcu:RCOM_1078720
description glycerophosphodiester phosphodiesterase, putative
nr
ID XP_002514861.1
description glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
swissprot
ID Q680A6
description Glycerophosphodiester phosphodiesterase GDPD3 OS=Arabidopsis thaliana GN=GDPD3 PE=2 SV=1
trembl
ID B9RM92
description Glycerophosphodiester phosphodiesterase, putative OS=Ricinus communis GN=RCOM_1078720 PE=4 SV=1
Gene Ontology
ID GO:0008081
description glycerophosphodiester phosphodiesterase gde1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56262: 69442-70257 , PASA_asmbl_56263: 70721-72037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007382_130 0.0 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
2 Hb_003226_130 0.1564517517 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
3 Hb_001097_080 0.1743401388 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
4 Hb_000413_080 0.207258676 - - -
5 Hb_000164_010 0.2140828864 - - small heat-shock protein, putative [Ricinus communis]
6 Hb_005227_050 0.2179140387 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003411_120 0.2210427881 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
8 Hb_003813_010 0.2225044078 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
9 Hb_094529_020 0.2254533256 - - leucine-rich repeat containing protein, putative [Ricinus communis]
10 Hb_000313_280 0.2325713972 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
11 Hb_002894_070 0.2360108089 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
12 Hb_001248_120 0.2371377619 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000358_130 0.2381561006 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
14 Hb_012799_080 0.2392989938 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
15 Hb_123301_010 0.2495288375 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001810_040 0.2513983245 - - -
17 Hb_000028_260 0.2517760206 - - hypothetical protein glysoja_041948 [Glycine soja]
18 Hb_001153_070 0.2538751264 - - -
19 Hb_122940_010 0.2548830228 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
20 Hb_001369_500 0.2570262024 - - endo-1,4-beta-glucanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007382_130 Hb_007382_130 Hb_003226_130 Hb_003226_130 Hb_007382_130--Hb_003226_130 Hb_001097_080 Hb_001097_080 Hb_007382_130--Hb_001097_080 Hb_000413_080 Hb_000413_080 Hb_007382_130--Hb_000413_080 Hb_000164_010 Hb_000164_010 Hb_007382_130--Hb_000164_010 Hb_005227_050 Hb_005227_050 Hb_007382_130--Hb_005227_050 Hb_003411_120 Hb_003411_120 Hb_007382_130--Hb_003411_120 Hb_003226_130--Hb_005227_050 Hb_000313_280 Hb_000313_280 Hb_003226_130--Hb_000313_280 Hb_001810_040 Hb_001810_040 Hb_003226_130--Hb_001810_040 Hb_123301_010 Hb_123301_010 Hb_003226_130--Hb_123301_010 Hb_003226_130--Hb_001097_080 Hb_001097_080--Hb_003411_120 Hb_147137_010 Hb_147137_010 Hb_001097_080--Hb_147137_010 Hb_000470_060 Hb_000470_060 Hb_001097_080--Hb_000470_060 Hb_012799_080 Hb_012799_080 Hb_001097_080--Hb_012799_080 Hb_016734_050 Hb_016734_050 Hb_001097_080--Hb_016734_050 Hb_004117_330 Hb_004117_330 Hb_000413_080--Hb_004117_330 Hb_002272_200 Hb_002272_200 Hb_000413_080--Hb_002272_200 Hb_000011_250 Hb_000011_250 Hb_000413_080--Hb_000011_250 Hb_002490_030 Hb_002490_030 Hb_000413_080--Hb_002490_030 Hb_000302_100 Hb_000302_100 Hb_000413_080--Hb_000302_100 Hb_005144_170 Hb_005144_170 Hb_000413_080--Hb_005144_170 Hb_004109_210 Hb_004109_210 Hb_000164_010--Hb_004109_210 Hb_003875_010 Hb_003875_010 Hb_000164_010--Hb_003875_010 Hb_104571_010 Hb_104571_010 Hb_000164_010--Hb_104571_010 Hb_002026_050 Hb_002026_050 Hb_000164_010--Hb_002026_050 Hb_000020_100 Hb_000020_100 Hb_000164_010--Hb_000020_100 Hb_122940_010 Hb_122940_010 Hb_000164_010--Hb_122940_010 Hb_003952_080 Hb_003952_080 Hb_005227_050--Hb_003952_080 Hb_004157_060 Hb_004157_060 Hb_005227_050--Hb_004157_060 Hb_005227_050--Hb_000313_280 Hb_005227_050--Hb_001810_040 Hb_003906_150 Hb_003906_150 Hb_005227_050--Hb_003906_150 Hb_000617_300 Hb_000617_300 Hb_003411_120--Hb_000617_300 Hb_003411_120--Hb_147137_010 Hb_003371_030 Hb_003371_030 Hb_003411_120--Hb_003371_030 Hb_005914_130 Hb_005914_130 Hb_003411_120--Hb_005914_130 Hb_001804_020 Hb_001804_020 Hb_003411_120--Hb_001804_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.94334 1.68924 19.7646 0.162726 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115712 3.76231 0.904995 0.716557 0.440563

CAGE analysis