Hb_007382_150

Information

Type -
Description -
Location Contig7382: 82337-89100
Sequence    

Annotation

kegg
ID rcu:RCOM_1078580
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085753.1
description PREDICTED: GDT1-like protein 4 [Jatropha curcas]
swissprot
ID Q93Y38
description GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1
trembl
ID A0A067JSK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18020 PE=4 SV=1
Gene Ontology
ID GO:0005794
description gdt1-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56264: 82368-84778 , PASA_asmbl_56265: 85145-89155
cDNA
(Sanger)
(ID:Location)		 024_C01.ab1: 82368-84087 , 048_G15.ab1: 85158-87126 , 051_K13.ab1: 82368-84256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007382_150 0.0 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
2 Hb_001616_060 0.0714145292 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
3 Hb_002097_060 0.0715595943 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_006573_220 0.0726693616 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
5 Hb_000069_100 0.0742808201 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007943_090 0.0783754157 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
7 Hb_003376_030 0.0788636709 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
8 Hb_003938_180 0.080735519 - - lesion inducing family protein [Populus trichocarpa]
9 Hb_000146_020 0.0810977818 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
10 Hb_001575_020 0.0845778936 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000347_410 0.0854546166 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
12 Hb_003929_120 0.0857561759 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
13 Hb_000329_330 0.0867905794 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
14 Hb_003504_020 0.0871399764 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
15 Hb_001912_010 0.0874454043 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
16 Hb_002078_460 0.088435365 - - -
17 Hb_008289_060 0.0896031414 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
18 Hb_001160_030 0.0943134543 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
19 Hb_001329_210 0.0943225559 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_148200_010 0.0958339091 - - hypothetical protein 33 [Hevea brasiliensis]

Gene co-expression network

sample Hb_007382_150 Hb_007382_150 Hb_001616_060 Hb_001616_060 Hb_007382_150--Hb_001616_060 Hb_002097_060 Hb_002097_060 Hb_007382_150--Hb_002097_060 Hb_006573_220 Hb_006573_220 Hb_007382_150--Hb_006573_220 Hb_000069_100 Hb_000069_100 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030 Hb_001575_020 Hb_001575_020 Hb_001616_060--Hb_001575_020 Hb_001616_060--Hb_000069_100 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_002097_060--Hb_003376_030 Hb_002097_060--Hb_000069_100 Hb_003455_040 Hb_003455_040 Hb_002097_060--Hb_003455_040 Hb_002097_060--Hb_006573_220 Hb_002097_060--Hb_001575_020 Hb_148200_010 Hb_148200_010 Hb_002097_060--Hb_148200_010 Hb_001191_090 Hb_001191_090 Hb_006573_220--Hb_001191_090 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_006573_220--Hb_003376_030 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000069_100--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_000069_100--Hb_006573_220 Hb_000009_160 Hb_000009_160 Hb_007943_090--Hb_000009_160 Hb_000146_020 Hb_000146_020 Hb_007943_090--Hb_000146_020 Hb_007943_090--Hb_008289_060 Hb_004586_320 Hb_004586_320 Hb_007943_090--Hb_004586_320 Hb_001998_050 Hb_001998_050 Hb_007943_090--Hb_001998_050 Hb_007943_090--Hb_003376_030 Hb_003376_030--Hb_003455_040 Hb_003376_030--Hb_148200_010 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.3805 20.0633 12.0293 24.5112 35.0945 40.5594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.961 129.829 128.849 28.6259 15.4049

CAGE analysis