Hb_007383_020

Information

Type -
Description -
Location Contig7383: 24518-29264
Sequence    

Annotation

kegg
ID rcu:RCOM_1691850
description hypothetical protein
nr
ID XP_002509953.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCR9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691850 PE=4 SV=1
Gene Ontology
ID GO:0005794
description histone-lysine n-methyltransferase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56267: 24527-29081 , PASA_asmbl_56268: 25450-25564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007383_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001318_050 0.0682184743 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_005648_010 0.0833231907 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
4 Hb_000025_190 0.0865848753 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
5 Hb_012678_020 0.0876389795 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
6 Hb_000800_090 0.093934647 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
7 Hb_000115_150 0.0976799193 - - PREDICTED: IST1 homolog [Jatropha curcas]
8 Hb_012022_050 0.0981309731 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
9 Hb_004046_030 0.0985237437 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
10 Hb_000525_090 0.1012867137 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
11 Hb_000094_210 0.1017409429 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
12 Hb_007558_100 0.1040266087 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
13 Hb_002093_060 0.1040617946 - - phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_062537_010 0.1050896167 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
15 Hb_000227_070 0.1057358827 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
16 Hb_003206_110 0.1057510246 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
17 Hb_010560_050 0.1065492076 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
18 Hb_001085_240 0.1070477869 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
19 Hb_001104_100 0.1090523909 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
20 Hb_004880_150 0.1095837802 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]

Gene co-expression network

sample Hb_007383_020 Hb_007383_020 Hb_001318_050 Hb_001318_050 Hb_007383_020--Hb_001318_050 Hb_005648_010 Hb_005648_010 Hb_007383_020--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_007383_020--Hb_000025_190 Hb_012678_020 Hb_012678_020 Hb_007383_020--Hb_012678_020 Hb_000800_090 Hb_000800_090 Hb_007383_020--Hb_000800_090 Hb_000115_150 Hb_000115_150 Hb_007383_020--Hb_000115_150 Hb_001318_050--Hb_005648_010 Hb_001318_050--Hb_000025_190 Hb_001318_050--Hb_012678_020 Hb_004880_150 Hb_004880_150 Hb_001318_050--Hb_004880_150 Hb_001318_050--Hb_000800_090 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_005648_010--Hb_004880_150 Hb_005648_010--Hb_000115_150 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_000025_190--Hb_004880_150 Hb_003988_050 Hb_003988_050 Hb_000025_190--Hb_003988_050 Hb_000025_190--Hb_000115_150 Hb_007558_100 Hb_007558_100 Hb_012678_020--Hb_007558_100 Hb_012678_020--Hb_002093_060 Hb_004046_030 Hb_004046_030 Hb_012678_020--Hb_004046_030 Hb_012678_020--Hb_000800_090 Hb_003206_110 Hb_003206_110 Hb_012678_020--Hb_003206_110 Hb_005701_120 Hb_005701_120 Hb_000800_090--Hb_005701_120 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_000800_090--Hb_005648_010 Hb_000115_150--Hb_000120_370 Hb_000115_150--Hb_003988_050 Hb_000115_150--Hb_062537_010 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.8879 4.16303 6.12986 20.9133 4.92376 8.9072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6125 10.5578 10.2641 21.9594 15.849

CAGE analysis