Hb_007386_010

Information

Type -
Description -
Location Contig7386: 31246-37676
Sequence    

Annotation

kegg
ID tcc:TCM_009243
description hypothetical protein
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061E4P4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_009243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007386_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_021906_010 0.0860295726 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
3 Hb_004200_030 0.1210046017 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
4 Hb_002099_010 0.1491936488 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
5 Hb_002259_140 0.150835538 - - -
6 Hb_004097_040 0.1840140026 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_044555_010 0.235250607 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
8 Hb_002081_170 0.2427684764 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
9 Hb_101319_020 0.2428714387 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
10 Hb_003120_100 0.2438518036 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
11 Hb_000175_580 0.2546932373 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
12 Hb_004241_010 0.2607899828 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_001529_070 0.26599334 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
14 Hb_006376_010 0.2745507038 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
15 Hb_032974_010 0.2746744719 - - -
16 Hb_033594_070 0.2747128151 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
17 Hb_000123_200 0.2754185272 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
18 Hb_160366_010 0.2755442383 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
19 Hb_001911_070 0.2787955784 - - -
20 Hb_000136_160 0.2861629967 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007386_010 Hb_007386_010 Hb_021906_010 Hb_021906_010 Hb_007386_010--Hb_021906_010 Hb_004200_030 Hb_004200_030 Hb_007386_010--Hb_004200_030 Hb_002099_010 Hb_002099_010 Hb_007386_010--Hb_002099_010 Hb_002259_140 Hb_002259_140 Hb_007386_010--Hb_002259_140 Hb_004097_040 Hb_004097_040 Hb_007386_010--Hb_004097_040 Hb_044555_010 Hb_044555_010 Hb_007386_010--Hb_044555_010 Hb_021906_010--Hb_002259_140 Hb_021906_010--Hb_002099_010 Hb_021906_010--Hb_004200_030 Hb_021906_010--Hb_004097_040 Hb_000175_580 Hb_000175_580 Hb_021906_010--Hb_000175_580 Hb_004200_030--Hb_002259_140 Hb_004200_030--Hb_004097_040 Hb_004200_030--Hb_044555_010 Hb_002081_170 Hb_002081_170 Hb_004200_030--Hb_002081_170 Hb_000123_200 Hb_000123_200 Hb_002099_010--Hb_000123_200 Hb_160366_010 Hb_160366_010 Hb_002099_010--Hb_160366_010 Hb_002099_010--Hb_002259_140 Hb_002099_010--Hb_000175_580 Hb_002259_140--Hb_004097_040 Hb_001911_070 Hb_001911_070 Hb_002259_140--Hb_001911_070 Hb_004241_010 Hb_004241_010 Hb_002259_140--Hb_004241_010 Hb_006376_010 Hb_006376_010 Hb_004097_040--Hb_006376_010 Hb_000136_160 Hb_000136_160 Hb_004097_040--Hb_000136_160 Hb_004097_040--Hb_044555_010 Hb_044555_010--Hb_002081_170 Hb_001979_030 Hb_001979_030 Hb_044555_010--Hb_001979_030 Hb_044555_010--Hb_000136_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0129991 0.0134761 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0376777 0.0296392 0 0 0

CAGE analysis