Hb_007386_040

Information

Type -
Description -
Location Contig7386: 72327-77785
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04250g
description POPTRDRAFT_258022; hypothetical protein
nr
ID XP_012075390.1
description PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9R0X4
description Acyl-coenzyme A thioesterase 9, mitochondrial OS=Mus musculus GN=Acot9 PE=1 SV=1
trembl
ID B9IJ37
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s04250g PE=4 SV=2
Gene Ontology
ID GO:0016853
description acyl-coenzyme a thioesterase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56274: 72069-73679 , PASA_asmbl_56275: 73689-73823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007386_040 0.0 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
2 Hb_010344_050 0.0801632356 - - Adagio 1 -like protein [Gossypium arboreum]
3 Hb_000252_100 0.0816538447 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
4 Hb_000505_150 0.0821409319 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
5 Hb_000012_310 0.0825887722 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
6 Hb_000454_090 0.0869603183 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
7 Hb_000109_180 0.087679359 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
8 Hb_008748_030 0.0884937068 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002660_170 0.0919697784 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
10 Hb_003305_040 0.0920099262 - - AP47/50p mRNA family protein [Populus trichocarpa]
11 Hb_001789_150 0.0924274817 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
12 Hb_000497_300 0.0934278901 - - peroxisomal membrane protein [Hevea brasiliensis]
13 Hb_000406_140 0.0943952372 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007044_050 0.0947919072 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
15 Hb_038574_010 0.095117153 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
16 Hb_006059_010 0.0954424614 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
17 Hb_007218_120 0.0964633662 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
18 Hb_001818_100 0.0965250623 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
19 Hb_001898_080 0.0967629272 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
20 Hb_000060_050 0.0968068926 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]

Gene co-expression network

sample Hb_007386_040 Hb_007386_040 Hb_010344_050 Hb_010344_050 Hb_007386_040--Hb_010344_050 Hb_000252_100 Hb_000252_100 Hb_007386_040--Hb_000252_100 Hb_000505_150 Hb_000505_150 Hb_007386_040--Hb_000505_150 Hb_000012_310 Hb_000012_310 Hb_007386_040--Hb_000012_310 Hb_000454_090 Hb_000454_090 Hb_007386_040--Hb_000454_090 Hb_000109_180 Hb_000109_180 Hb_007386_040--Hb_000109_180 Hb_000497_300 Hb_000497_300 Hb_010344_050--Hb_000497_300 Hb_004712_130 Hb_004712_130 Hb_010344_050--Hb_004712_130 Hb_001352_020 Hb_001352_020 Hb_010344_050--Hb_001352_020 Hb_007044_050 Hb_007044_050 Hb_010344_050--Hb_007044_050 Hb_010344_050--Hb_000505_150 Hb_000252_100--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000252_100--Hb_000505_150 Hb_000505_150--Hb_000140_380 Hb_000853_200 Hb_000853_200 Hb_000505_150--Hb_000853_200 Hb_001898_080 Hb_001898_080 Hb_000505_150--Hb_001898_080 Hb_008748_030 Hb_008748_030 Hb_000012_310--Hb_008748_030 Hb_006452_120 Hb_006452_120 Hb_000012_310--Hb_006452_120 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_006059_010 Hb_006059_010 Hb_000012_310--Hb_006059_010 Hb_000574_450 Hb_000574_450 Hb_000012_310--Hb_000574_450 Hb_002660_170 Hb_002660_170 Hb_000012_310--Hb_002660_170 Hb_000454_090--Hb_000173_410 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050 Hb_000109_180--Hb_008748_030 Hb_000109_180--Hb_006059_010 Hb_000109_180--Hb_000012_310 Hb_000227_160 Hb_000227_160 Hb_000109_180--Hb_000227_160 Hb_000363_040 Hb_000363_040 Hb_000109_180--Hb_000363_040 Hb_005305_050 Hb_005305_050 Hb_000109_180--Hb_005305_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06116 3.25681 3.25649 6.01336 1.15334 3.01033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71786 3.85314 6.55823 4.35514 4.58789

CAGE analysis