Hb_007389_010

Information

Type -
Description -
Location Contig7389: 7597-10277
Sequence    

Annotation

kegg
ID rcu:RCOM_1327020
description hypothetical protein
nr
ID XP_012070231.1
description PREDICTED: THO complex subunit 7A [Jatropha curcas]
swissprot
ID Q8LDS5
description THO complex subunit 7A OS=Arabidopsis thaliana GN=THO7A PE=1 SV=1
trembl
ID A0A067L5Z6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02544 PE=4 SV=1
Gene Ontology
ID GO:0000445
description tho complex subunit 7a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56279: 8015-10163 , PASA_asmbl_56280: 8786-9067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007389_010 0.0 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
2 Hb_000866_260 0.0584322367 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
3 Hb_000614_160 0.0639031598 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
4 Hb_017358_030 0.0655743431 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
5 Hb_000866_010 0.0676739391 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002235_250 0.0712536749 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
7 Hb_032264_070 0.0800842038 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
8 Hb_000329_320 0.0811285947 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
9 Hb_000137_040 0.0816953025 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
10 Hb_111985_050 0.0826735732 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
11 Hb_008554_030 0.0831712798 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
12 Hb_000917_060 0.0831791242 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
13 Hb_000753_240 0.0832191987 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
14 Hb_005496_140 0.0833326849 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000416_040 0.0835443639 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
16 Hb_010222_020 0.0868080981 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
17 Hb_007632_030 0.0889722447 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
18 Hb_000465_090 0.0906372695 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
19 Hb_007317_200 0.0910008666 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_004841_010 0.0911676761 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007389_010 Hb_007389_010 Hb_000866_260 Hb_000866_260 Hb_007389_010--Hb_000866_260 Hb_000614_160 Hb_000614_160 Hb_007389_010--Hb_000614_160 Hb_017358_030 Hb_017358_030 Hb_007389_010--Hb_017358_030 Hb_000866_010 Hb_000866_010 Hb_007389_010--Hb_000866_010 Hb_002235_250 Hb_002235_250 Hb_007389_010--Hb_002235_250 Hb_032264_070 Hb_032264_070 Hb_007389_010--Hb_032264_070 Hb_000917_060 Hb_000917_060 Hb_000866_260--Hb_000917_060 Hb_000866_260--Hb_017358_030 Hb_002013_020 Hb_002013_020 Hb_000866_260--Hb_002013_020 Hb_000329_320 Hb_000329_320 Hb_000866_260--Hb_000329_320 Hb_000753_240 Hb_000753_240 Hb_000866_260--Hb_000753_240 Hb_000260_030 Hb_000260_030 Hb_000614_160--Hb_000260_030 Hb_005496_140 Hb_005496_140 Hb_000614_160--Hb_005496_140 Hb_012019_010 Hb_012019_010 Hb_000614_160--Hb_012019_010 Hb_000614_220 Hb_000614_220 Hb_000614_160--Hb_000614_220 Hb_002046_180 Hb_002046_180 Hb_000614_160--Hb_002046_180 Hb_000165_250 Hb_000165_250 Hb_017358_030--Hb_000165_250 Hb_002739_100 Hb_002739_100 Hb_017358_030--Hb_002739_100 Hb_000029_050 Hb_000029_050 Hb_017358_030--Hb_000029_050 Hb_017358_030--Hb_000917_060 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_000260_100 Hb_000260_100 Hb_000866_010--Hb_000260_100 Hb_000866_010--Hb_002235_250 Hb_002235_250--Hb_005496_140 Hb_000331_260 Hb_000331_260 Hb_002235_250--Hb_000331_260 Hb_001971_010 Hb_001971_010 Hb_002235_250--Hb_001971_010 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000375_350 Hb_000375_350 Hb_002235_250--Hb_000375_350 Hb_032264_070--Hb_000329_320 Hb_000656_240 Hb_000656_240 Hb_032264_070--Hb_000656_240 Hb_001268_420 Hb_001268_420 Hb_032264_070--Hb_001268_420 Hb_000985_030 Hb_000985_030 Hb_032264_070--Hb_000985_030 Hb_032264_070--Hb_000614_160 Hb_000046_050 Hb_000046_050 Hb_032264_070--Hb_000046_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1363 12.4845 20.4755 14.3628 20.5484 20.4592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.912 34.1671 24.9271 10.3033 24.8937

CAGE analysis