Hb_007390_010

Information

Type -
Description -
Location Contig7390: 1636-16011
Sequence    

Annotation

kegg
ID rcu:RCOM_1720980
description catalytic, putative
nr
ID XP_002521107.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q8BZW8
description NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1
trembl
ID B9S538
description Catalytic, putative OS=Ricinus communis GN=RCOM_1720980 PE=4 SV=1
Gene Ontology
ID GO:0006342
description nhl domain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56313: 1715-2930 , PASA_asmbl_56314: 3420-3698 , PASA_asmbl_56315: 5135-10042 , PASA_asmbl_56316: 10555-10983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007390_010 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001599_040 0.0623489545 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
3 Hb_001279_150 0.0624348409 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
4 Hb_004143_060 0.062933579 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000331_260 0.0632796204 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
6 Hb_008847_030 0.0640389753 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
7 Hb_001021_150 0.0649737893 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
8 Hb_000640_170 0.0650236899 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
9 Hb_000215_110 0.0658067418 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
10 Hb_000334_280 0.0660503951 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
11 Hb_001946_400 0.0667516978 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
12 Hb_001014_160 0.0675066022 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
13 Hb_006831_140 0.067849741 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_007416_340 0.0687373065 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_002154_100 0.069372715 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
16 Hb_000696_330 0.0698963264 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
17 Hb_000156_010 0.0713286513 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
18 Hb_000078_120 0.0720514449 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
19 Hb_000035_470 0.0726286242 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
20 Hb_003125_120 0.0735385026 - - PREDICTED: TITAN-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_007390_010 Hb_007390_010 Hb_001599_040 Hb_001599_040 Hb_007390_010--Hb_001599_040 Hb_001279_150 Hb_001279_150 Hb_007390_010--Hb_001279_150 Hb_004143_060 Hb_004143_060 Hb_007390_010--Hb_004143_060 Hb_000331_260 Hb_000331_260 Hb_007390_010--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_007390_010--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_007390_010--Hb_001021_150 Hb_002303_070 Hb_002303_070 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_000215_110 Hb_000215_110 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_004143_060--Hb_000331_260 Hb_016172_020 Hb_016172_020 Hb_004143_060--Hb_016172_020 Hb_011037_030 Hb_011037_030 Hb_004143_060--Hb_011037_030 Hb_000696_330 Hb_000696_330 Hb_004143_060--Hb_000696_330 Hb_004143_060--Hb_000215_110 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_000331_260--Hb_011037_030 Hb_008847_030--Hb_001021_150 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_001021_150--Hb_006831_140 Hb_001021_150--Hb_000905_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04908 3.62858 4.36851 4.92624 4.52644 7.3842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88784 7.36948 4.20054 6.27136 5.63815

CAGE analysis