Hb_007390_020

Information

Type -
Description -
Location Contig7390: 23882-27464
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12650g
description POPTRDRAFT_821141; hypothetical protein
nr
ID XP_011047444.1
description PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
swissprot
ID P43557
description Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP32 PE=1 SV=1
trembl
ID B9HRG4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s12650g PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56317: 25882-26076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007390_020 0.0 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
2 Hb_019181_030 0.0939246472 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
3 Hb_000152_600 0.1085092446 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
4 Hb_005054_220 0.1156721305 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
5 Hb_000913_040 0.124383885 - - Methyltransferase-related protein, putative [Theobroma cacao]
6 Hb_004176_070 0.1245127203 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
7 Hb_010368_050 0.1278201834 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
8 Hb_000260_720 0.1281436617 - - PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
9 Hb_002042_150 0.1295115617 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
10 Hb_000384_070 0.1303885258 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000008_190 0.1308001537 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
12 Hb_124373_010 0.1309503114 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
13 Hb_000087_070 0.1312775949 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
14 Hb_004357_050 0.1318063286 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
15 Hb_001633_080 0.1328099454 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
16 Hb_002133_020 0.1329703223 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003878_200 0.134376689 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
18 Hb_009661_030 0.1348617456 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
19 Hb_001609_040 0.1354842377 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
20 Hb_005993_010 0.1355047395 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_007390_020 Hb_007390_020 Hb_019181_030 Hb_019181_030 Hb_007390_020--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_007390_020--Hb_000152_600 Hb_005054_220 Hb_005054_220 Hb_007390_020--Hb_005054_220 Hb_000913_040 Hb_000913_040 Hb_007390_020--Hb_000913_040 Hb_004176_070 Hb_004176_070 Hb_007390_020--Hb_004176_070 Hb_010368_050 Hb_010368_050 Hb_007390_020--Hb_010368_050 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_019181_030--Hb_000152_600 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020 Hb_081599_010 Hb_081599_010 Hb_000152_600--Hb_081599_010 Hb_005993_010 Hb_005993_010 Hb_000152_600--Hb_005993_010 Hb_000072_300 Hb_000072_300 Hb_000152_600--Hb_000072_300 Hb_000130_270 Hb_000130_270 Hb_000152_600--Hb_000130_270 Hb_000069_640 Hb_000069_640 Hb_000152_600--Hb_000069_640 Hb_004117_190 Hb_004117_190 Hb_005054_220--Hb_004117_190 Hb_005754_040 Hb_005754_040 Hb_005054_220--Hb_005754_040 Hb_003540_050 Hb_003540_050 Hb_005054_220--Hb_003540_050 Hb_004055_050 Hb_004055_050 Hb_005054_220--Hb_004055_050 Hb_000539_050 Hb_000539_050 Hb_005054_220--Hb_000539_050 Hb_000580_100 Hb_000580_100 Hb_000913_040--Hb_000580_100 Hb_000953_130 Hb_000953_130 Hb_000913_040--Hb_000953_130 Hb_000116_560 Hb_000116_560 Hb_000913_040--Hb_000116_560 Hb_011671_480 Hb_011671_480 Hb_000913_040--Hb_011671_480 Hb_001584_260 Hb_001584_260 Hb_000913_040--Hb_001584_260 Hb_005000_330 Hb_005000_330 Hb_004176_070--Hb_005000_330 Hb_002042_150 Hb_002042_150 Hb_004176_070--Hb_002042_150 Hb_000384_070 Hb_000384_070 Hb_004176_070--Hb_000384_070 Hb_004230_020 Hb_004230_020 Hb_004176_070--Hb_004230_020 Hb_045003_010 Hb_045003_010 Hb_004176_070--Hb_045003_010 Hb_000167_080 Hb_000167_080 Hb_004176_070--Hb_000167_080 Hb_001951_130 Hb_001951_130 Hb_010368_050--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_010368_050--Hb_000127_140 Hb_010407_140 Hb_010407_140 Hb_010368_050--Hb_010407_140 Hb_000392_340 Hb_000392_340 Hb_010368_050--Hb_000392_340 Hb_083380_020 Hb_083380_020 Hb_010368_050--Hb_083380_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.95605 1.00762 2.50838 5.88298 0.931312 2.12099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62542 2.78475 0.750474 1.89631 1.8523

CAGE analysis