Hb_007393_010

Information

Type -
Description -
Location Contig7393: 8703-9764
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007393_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_000914_160 1.89513e-05 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
3 Hb_006053_010 3.1254e-05 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_018006_020 4.84827e-05 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
5 Hb_000413_310 9.8105e-05 - - -
6 Hb_000111_160 0.000109904 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
7 Hb_000098_160 0.0001108217 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003052_160 0.0001108217 - - -
9 Hb_004899_270 0.0001377769 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
10 Hb_123098_010 0.0001583384 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_028462_010 0.0001610463 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
12 Hb_002130_010 0.0001752975 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
13 Hb_061463_010 0.0001881838 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_185616_010 0.0002254826 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_012543_020 0.0002324767 - - -
16 Hb_000482_130 0.000236837 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_000510_380 0.0002417295 - - -
18 Hb_002997_130 0.0005253368 - - -
19 Hb_000270_820 0.052078999 - - -
20 Hb_003675_010 0.0834711653 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007393_010 Hb_007393_010 Hb_000914_160 Hb_000914_160 Hb_007393_010--Hb_000914_160 Hb_006053_010 Hb_006053_010 Hb_007393_010--Hb_006053_010 Hb_018006_020 Hb_018006_020 Hb_007393_010--Hb_018006_020 Hb_000413_310 Hb_000413_310 Hb_007393_010--Hb_000413_310 Hb_000111_160 Hb_000111_160 Hb_007393_010--Hb_000111_160 Hb_000098_160 Hb_000098_160 Hb_007393_010--Hb_000098_160 Hb_000914_160--Hb_006053_010 Hb_000914_160--Hb_018006_020 Hb_000914_160--Hb_000111_160 Hb_000914_160--Hb_000413_310 Hb_004899_270 Hb_004899_270 Hb_000914_160--Hb_004899_270 Hb_006053_010--Hb_018006_020 Hb_006053_010--Hb_000111_160 Hb_006053_010--Hb_004899_270 Hb_123098_010 Hb_123098_010 Hb_006053_010--Hb_123098_010 Hb_018006_020--Hb_000111_160 Hb_018006_020--Hb_004899_270 Hb_018006_020--Hb_123098_010 Hb_000413_310--Hb_000098_160 Hb_003052_160 Hb_003052_160 Hb_000413_310--Hb_003052_160 Hb_002130_010 Hb_002130_010 Hb_000413_310--Hb_002130_010 Hb_061463_010 Hb_061463_010 Hb_000413_310--Hb_061463_010 Hb_000111_160--Hb_004899_270 Hb_000111_160--Hb_123098_010 Hb_028462_010 Hb_028462_010 Hb_000111_160--Hb_028462_010 Hb_000098_160--Hb_003052_160 Hb_000098_160--Hb_002130_010 Hb_000098_160--Hb_061463_010 Hb_185616_010 Hb_185616_010 Hb_000098_160--Hb_185616_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0627024 0.0493063 0 0 0

CAGE analysis