Hb_007403_050

Information

Type -
Description -
Location Contig7403: 46855-47613
Sequence    

Annotation

kegg
ID rcu:RCOM_0516610
description golgi membrane protein sb140, putative
nr
ID XP_012066485.1
description PREDICTED: protein YIPF5 homolog [Jatropha curcas]
swissprot
ID Q8N8F6
description Protein YIPF7 OS=Homo sapiens GN=YIPF7 PE=2 SV=2
trembl
ID A0A067LF89
description Protein YIPF OS=Jatropha curcas GN=JCGZ_23674 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein yipf5 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_A02.ab1: 46937-47732 , 028_M17.ab1: 47026-47734 , 047_F23.ab1: 47000-47734

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007403_050 0.0 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
2 Hb_000034_160 0.0619001639 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
3 Hb_011465_030 0.0827894181 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_001946_300 0.0841568853 - - PREDICTED: F-box protein At-B [Jatropha curcas]
5 Hb_000363_130 0.0881517887 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
6 Hb_004032_180 0.0909448904 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
7 Hb_000283_130 0.0928200488 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
8 Hb_000457_050 0.0950326633 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
9 Hb_001059_100 0.0961519725 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
10 Hb_003299_030 0.0976706772 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
11 Hb_000540_120 0.0979923442 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
12 Hb_003086_190 0.0983971324 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
13 Hb_017075_030 0.0987440095 - - helicase, putative [Ricinus communis]
14 Hb_001141_370 0.1002004638 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
15 Hb_006346_040 0.1008978754 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
16 Hb_000865_080 0.1015499243 - - arsenite-resistance protein, putative [Ricinus communis]
17 Hb_010738_010 0.1018917919 - - PREDICTED: B2 protein [Jatropha curcas]
18 Hb_000291_190 0.1020709623 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
19 Hb_000140_070 0.1020720771 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
20 Hb_000152_340 0.1025444449 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_007403_050 Hb_007403_050 Hb_000034_160 Hb_000034_160 Hb_007403_050--Hb_000034_160 Hb_011465_030 Hb_011465_030 Hb_007403_050--Hb_011465_030 Hb_001946_300 Hb_001946_300 Hb_007403_050--Hb_001946_300 Hb_000363_130 Hb_000363_130 Hb_007403_050--Hb_000363_130 Hb_004032_180 Hb_004032_180 Hb_007403_050--Hb_004032_180 Hb_000283_130 Hb_000283_130 Hb_007403_050--Hb_000283_130 Hb_000034_160--Hb_004032_180 Hb_000034_160--Hb_000283_130 Hb_003373_040 Hb_003373_040 Hb_000034_160--Hb_003373_040 Hb_000457_050 Hb_000457_050 Hb_000034_160--Hb_000457_050 Hb_010738_010 Hb_010738_010 Hb_000034_160--Hb_010738_010 Hb_002477_150 Hb_002477_150 Hb_011465_030--Hb_002477_150 Hb_000265_250 Hb_000265_250 Hb_011465_030--Hb_000265_250 Hb_011465_030--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_000363_130--Hb_140049_020 Hb_000363_130--Hb_000313_340 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090 Hb_004032_180--Hb_000865_080 Hb_002163_010 Hb_002163_010 Hb_004032_180--Hb_002163_010 Hb_017075_030 Hb_017075_030 Hb_004032_180--Hb_017075_030 Hb_004032_180--Hb_030565_090 Hb_001454_320 Hb_001454_320 Hb_004032_180--Hb_001454_320 Hb_005883_010 Hb_005883_010 Hb_000283_130--Hb_005883_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_000283_130--Hb_017075_030 Hb_000283_130--Hb_000457_050 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.4264 145.933 52.6801 39.2578 92.409 112.606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4912 35.2409 42.5235 37.0098 15.344

CAGE analysis