Hb_007403_060

Information

Type -
Description -
Location Contig7403: 49844-53621
Sequence    

Annotation

kegg
ID vvi:100247667
description CAAX prenyl protease 2
nr
ID XP_012066483.1
description PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
swissprot
ID Q8GW19
description CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2
trembl
ID A0A067L6C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23673 PE=4 SV=1
Gene Ontology
ID GO:0016020
description caax prenyl protease 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56376: 49833-53441 , PASA_asmbl_56377: 50363-53450
cDNA
(Sanger)
(ID:Location)		 030_E20.ab1: 49835-51952

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007403_060 0.0 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
2 Hb_008120_010 0.0942014663 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
3 Hb_011671_040 0.0950040043 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
4 Hb_003940_040 0.0972964083 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000270_490 0.1049955491 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
6 Hb_000808_280 0.1079561032 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000120_060 0.1094272157 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
8 Hb_099878_030 0.1100214762 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
9 Hb_003693_070 0.1112944066 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
10 Hb_003376_330 0.1128013883 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
11 Hb_000260_170 0.1129673965 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
12 Hb_001584_080 0.1129767949 - - hypothetical protein JCGZ_23206 [Jatropha curcas]
13 Hb_000676_080 0.1153756174 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
14 Hb_001492_020 0.1158608775 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
15 Hb_002739_020 0.1164794245 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
16 Hb_012395_180 0.1169840099 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
17 Hb_002053_140 0.1170308112 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
18 Hb_004127_030 0.1179730765 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
19 Hb_158062_010 0.1180628282 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
20 Hb_000735_110 0.1181337198 - - fk506-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007403_060 Hb_007403_060 Hb_008120_010 Hb_008120_010 Hb_007403_060--Hb_008120_010 Hb_011671_040 Hb_011671_040 Hb_007403_060--Hb_011671_040 Hb_003940_040 Hb_003940_040 Hb_007403_060--Hb_003940_040 Hb_000270_490 Hb_000270_490 Hb_007403_060--Hb_000270_490 Hb_000808_280 Hb_000808_280 Hb_007403_060--Hb_000808_280 Hb_000120_060 Hb_000120_060 Hb_007403_060--Hb_000120_060 Hb_008120_010--Hb_011671_040 Hb_009049_020 Hb_009049_020 Hb_008120_010--Hb_009049_020 Hb_000107_200 Hb_000107_200 Hb_008120_010--Hb_000107_200 Hb_002828_020 Hb_002828_020 Hb_008120_010--Hb_002828_020 Hb_002445_120 Hb_002445_120 Hb_008120_010--Hb_002445_120 Hb_000025_470 Hb_000025_470 Hb_011671_040--Hb_000025_470 Hb_008748_040 Hb_008748_040 Hb_011671_040--Hb_008748_040 Hb_004127_030 Hb_004127_030 Hb_011671_040--Hb_004127_030 Hb_011671_040--Hb_000270_490 Hb_003688_130 Hb_003688_130 Hb_011671_040--Hb_003688_130 Hb_099878_030 Hb_099878_030 Hb_003940_040--Hb_099878_030 Hb_010142_030 Hb_010142_030 Hb_003940_040--Hb_010142_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_003940_040--Hb_000023_280 Hb_000140_280 Hb_000140_280 Hb_003940_040--Hb_000140_280 Hb_003376_330 Hb_003376_330 Hb_000270_490--Hb_003376_330 Hb_000270_490--Hb_000120_060 Hb_073973_100 Hb_073973_100 Hb_000270_490--Hb_073973_100 Hb_003693_070 Hb_003693_070 Hb_000270_490--Hb_003693_070 Hb_026198_070 Hb_026198_070 Hb_000270_490--Hb_026198_070 Hb_000270_490--Hb_004127_030 Hb_000630_050 Hb_000630_050 Hb_000808_280--Hb_000630_050 Hb_000085_160 Hb_000085_160 Hb_000808_280--Hb_000085_160 Hb_000808_280--Hb_003693_070 Hb_000083_250 Hb_000083_250 Hb_000808_280--Hb_000083_250 Hb_000808_280--Hb_000120_060 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_000120_060--Hb_003693_070 Hb_000120_060--Hb_010142_030 Hb_001492_020 Hb_001492_020 Hb_000120_060--Hb_001492_020 Hb_002783_240 Hb_002783_240 Hb_000120_060--Hb_002783_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1749 1.5979 1.598 5.99215 3.54708 4.44461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94598 3.09493 1.70539 3.97443 1.71415

CAGE analysis