Hb_007407_040

Information

Type -
Description -
Location Contig7407: 30632-45003
Sequence    

Annotation

kegg
ID rcu:RCOM_0484360
description ankyrin repeat-containing protein, putative
nr
ID XP_002531277.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID P16157
description Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3
trembl
ID B9SZ58
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0484360 PE=4 SV=1
Gene Ontology
ID GO:0000741
description ankyrin repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56382: 30680-44953 , PASA_asmbl_56383: 30680-44953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007407_040 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_000048_140 0.0735930011 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
3 Hb_001366_040 0.0750346281 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
4 Hb_004195_280 0.0760973222 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
5 Hb_000179_020 0.0762901776 - - amidase, putative [Ricinus communis]
6 Hb_001504_160 0.0769902086 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
7 Hb_003362_040 0.0792110065 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
8 Hb_000317_440 0.0798793915 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
9 Hb_001221_040 0.0810020432 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
10 Hb_000046_440 0.0811047299 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
11 Hb_031754_010 0.0813559507 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
12 Hb_000184_110 0.0816762264 - - hypothetical protein F383_18769 [Gossypium arboreum]
13 Hb_000729_050 0.0824769004 - - Pinin, putative [Ricinus communis]
14 Hb_009265_080 0.083061054 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
15 Hb_000076_080 0.0845444515 - - PREDICTED: protein MOS2 [Jatropha curcas]
16 Hb_002587_020 0.0854585641 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_001584_110 0.0865090356 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
18 Hb_001871_040 0.0868817032 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
19 Hb_003406_040 0.0869938261 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
20 Hb_010423_020 0.0870129845 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_007407_040 Hb_007407_040 Hb_000048_140 Hb_000048_140 Hb_007407_040--Hb_000048_140 Hb_001366_040 Hb_001366_040 Hb_007407_040--Hb_001366_040 Hb_004195_280 Hb_004195_280 Hb_007407_040--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_007407_040--Hb_000179_020 Hb_001504_160 Hb_001504_160 Hb_007407_040--Hb_001504_160 Hb_003362_040 Hb_003362_040 Hb_007407_040--Hb_003362_040 Hb_028639_010 Hb_028639_010 Hb_000048_140--Hb_028639_010 Hb_002200_130 Hb_002200_130 Hb_000048_140--Hb_002200_130 Hb_000034_050 Hb_000034_050 Hb_000048_140--Hb_000034_050 Hb_000048_140--Hb_003362_040 Hb_000230_330 Hb_000230_330 Hb_000048_140--Hb_000230_330 Hb_004055_040 Hb_004055_040 Hb_001366_040--Hb_004055_040 Hb_002798_040 Hb_002798_040 Hb_001366_040--Hb_002798_040 Hb_004452_100 Hb_004452_100 Hb_001366_040--Hb_004452_100 Hb_031754_010 Hb_031754_010 Hb_001366_040--Hb_031754_010 Hb_001366_040--Hb_001504_160 Hb_000327_310 Hb_000327_310 Hb_001366_040--Hb_000327_310 Hb_002174_060 Hb_002174_060 Hb_004195_280--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_004195_280--Hb_010423_020 Hb_009265_080 Hb_009265_080 Hb_004195_280--Hb_009265_080 Hb_171900_100 Hb_171900_100 Hb_004195_280--Hb_171900_100 Hb_003006_060 Hb_003006_060 Hb_004195_280--Hb_003006_060 Hb_004195_280--Hb_000179_020 Hb_011794_060 Hb_011794_060 Hb_000179_020--Hb_011794_060 Hb_000179_020--Hb_002174_060 Hb_002079_010 Hb_002079_010 Hb_000179_020--Hb_002079_010 Hb_000889_020 Hb_000889_020 Hb_000179_020--Hb_000889_020 Hb_001866_110 Hb_001866_110 Hb_000179_020--Hb_001866_110 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000915_050 Hb_000915_050 Hb_003362_040--Hb_000915_050 Hb_003362_040--Hb_002200_130 Hb_000244_250 Hb_000244_250 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_003362_040--Hb_000034_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.9568 20.9956 18.1418 12.8403 69.0666 82.9237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.5497 18.6119 39.3156 32.2397 19.6287

CAGE analysis