Hb_007416_020

Information

Type -
Description -
Location Contig7416: 11412-16681
Sequence    

Annotation

kegg
ID csv:101229144
description uncharacterized LOC101229144
nr
ID XP_004138688.1
description PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
swissprot
ID Q9FVR6
description Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=2 SV=1
trembl
ID A0A0A0LML0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56393: 11448-11559 , PASA_asmbl_56394: 12198-12510 , PASA_asmbl_56395: 13646-13845 , PASA_asmbl_56397: 15840-16327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_020 0.0 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
2 Hb_002431_050 0.0611170468 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
3 Hb_010672_060 0.0724882852 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
4 Hb_001080_080 0.0746533639 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
5 Hb_000365_080 0.0797067658 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
6 Hb_003226_210 0.0803645342 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
7 Hb_029584_060 0.0810952827 - - Grave disease carrier protein, putative [Ricinus communis]
8 Hb_007304_070 0.0812933226 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_004459_040 0.0814957287 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
10 Hb_000283_110 0.0825202192 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
11 Hb_000312_090 0.0835551064 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
12 Hb_002687_170 0.0850531219 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
13 Hb_000111_340 0.08527388 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
14 Hb_144598_020 0.0856509771 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
15 Hb_005211_190 0.0876969155 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
16 Hb_001633_030 0.0881496529 - - -
17 Hb_001634_040 0.0901642126 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
18 Hb_001882_070 0.0903279657 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
19 Hb_007944_040 0.0907690184 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
20 Hb_006541_010 0.0914252826 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_020 Hb_007416_020 Hb_002431_050 Hb_002431_050 Hb_007416_020--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_007416_020--Hb_010672_060 Hb_001080_080 Hb_001080_080 Hb_007416_020--Hb_001080_080 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_003226_210 Hb_003226_210 Hb_007416_020--Hb_003226_210 Hb_029584_060 Hb_029584_060 Hb_007416_020--Hb_029584_060 Hb_002431_050--Hb_010672_060 Hb_002830_020 Hb_002830_020 Hb_002431_050--Hb_002830_020 Hb_003893_050 Hb_003893_050 Hb_002431_050--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_002431_050--Hb_000283_110 Hb_002431_050--Hb_029584_060 Hb_005063_050 Hb_005063_050 Hb_010672_060--Hb_005063_050 Hb_000699_160 Hb_000699_160 Hb_010672_060--Hb_000699_160 Hb_010672_060--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_144598_020 Hb_144598_020 Hb_001080_080--Hb_144598_020 Hb_000221_150 Hb_000221_150 Hb_001080_080--Hb_000221_150 Hb_000028_400 Hb_000028_400 Hb_001080_080--Hb_000028_400 Hb_001045_080 Hb_001045_080 Hb_001080_080--Hb_001045_080 Hb_001080_080--Hb_029584_060 Hb_005211_190 Hb_005211_190 Hb_000365_080--Hb_005211_190 Hb_007304_070 Hb_007304_070 Hb_000365_080--Hb_007304_070 Hb_007575_070 Hb_007575_070 Hb_000365_080--Hb_007575_070 Hb_001424_020 Hb_001424_020 Hb_000365_080--Hb_001424_020 Hb_002107_120 Hb_002107_120 Hb_000365_080--Hb_002107_120 Hb_001214_160 Hb_001214_160 Hb_003226_210--Hb_001214_160 Hb_003226_210--Hb_000283_110 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_002660_030 Hb_002660_030 Hb_003226_210--Hb_002660_030 Hb_000134_070 Hb_000134_070 Hb_003226_210--Hb_000134_070 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_029584_060--Hb_002830_020 Hb_000120_750 Hb_000120_750 Hb_029584_060--Hb_000120_750 Hb_000201_120 Hb_000201_120 Hb_029584_060--Hb_000201_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19591 1.38531 1.77483 2.56826 1.71349 3.56005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21592 11.2622 3.84013 1.61908 2.07941

CAGE analysis