Hb_007416_030

Information

Type -
Description -
Location Contig7416: 17526-20230
Sequence    

Annotation

kegg
ID cit:102609676
description transcription initiation factor TFIID subunit 10-like
nr
ID XP_012076372.1
description PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
swissprot
ID O04173
description Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana GN=TAF10 PE=1 SV=1
trembl
ID A0A067KEN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07044 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor tfiid subunit 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56398: 17629-20205
cDNA
(Sanger)
(ID:Location)		 045_G20.ab1: 17629-20120

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_030 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
2 Hb_000608_370 0.0570331344 - - acyl-carrier-protein [Triadica sebifera]
3 Hb_002686_020 0.0646701239 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
4 Hb_000788_090 0.0659694856 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
5 Hb_002864_050 0.0680002683 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
6 Hb_001047_230 0.0703568603 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_003683_110 0.071033352 - - JHL10I11.3 [Jatropha curcas]
8 Hb_001105_030 0.071163478 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
9 Hb_000029_200 0.0736929022 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
10 Hb_005511_160 0.0753295 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
11 Hb_006031_020 0.0759972014 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
12 Hb_004735_040 0.0760497955 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
13 Hb_001821_010 0.0774446207 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
14 Hb_000920_110 0.0780266699 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
15 Hb_153112_020 0.0813312921 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
16 Hb_001484_070 0.0816899632 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000127_180 0.0821368612 - - 40S ribosomal protein S18, putative [Ricinus communis]
18 Hb_000270_270 0.0830934768 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
19 Hb_003050_080 0.0831574846 - - 40S ribosomal protein S14, putative [Ricinus communis]
20 Hb_000510_110 0.0831823645 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_007416_030 Hb_007416_030 Hb_000608_370 Hb_000608_370 Hb_007416_030--Hb_000608_370 Hb_002686_020 Hb_002686_020 Hb_007416_030--Hb_002686_020 Hb_000788_090 Hb_000788_090 Hb_007416_030--Hb_000788_090 Hb_002864_050 Hb_002864_050 Hb_007416_030--Hb_002864_050 Hb_001047_230 Hb_001047_230 Hb_007416_030--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_007416_030--Hb_003683_110 Hb_129204_030 Hb_129204_030 Hb_000608_370--Hb_129204_030 Hb_000608_370--Hb_001047_230 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_001540_010 Hb_001540_010 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_000788_090--Hb_001047_230 Hb_003656_070 Hb_003656_070 Hb_000788_090--Hb_003656_070 Hb_002110_120 Hb_002110_120 Hb_000788_090--Hb_002110_120 Hb_008173_090 Hb_008173_090 Hb_000788_090--Hb_008173_090 Hb_000029_200 Hb_000029_200 Hb_002864_050--Hb_000029_200 Hb_002830_020 Hb_002830_020 Hb_002864_050--Hb_002830_020 Hb_165132_010 Hb_165132_010 Hb_002864_050--Hb_165132_010 Hb_101705_030 Hb_101705_030 Hb_002864_050--Hb_101705_030 Hb_002874_190 Hb_002874_190 Hb_002864_050--Hb_002874_190 Hb_001047_230--Hb_003656_070 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_001047_230--Hb_129204_030 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_003683_110--Hb_001780_040 Hb_012573_070 Hb_012573_070 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3481 19.9135 38.1885 22.8184 50.5238 42.3288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.289 120.028 64.943 24.5589 27.0807

CAGE analysis