Hb_007416_060

Information

Type -
Description -
Location Contig7416: 37589-45602
Sequence    

Annotation

kegg
ID rcu:RCOM_0919640
description cysteine-type endopeptidase, putative (EC:3.1.2.15)
nr
ID XP_012076367.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
swissprot
ID Q9SJA1
description Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2
trembl
ID A0A067KNS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07040 PE=4 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56406: 37761-37982 , PASA_asmbl_56407: 40100-40798 , PASA_asmbl_56408: 43277-44392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_060 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
2 Hb_005488_200 0.0594088391 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
3 Hb_000116_260 0.0621130912 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
4 Hb_000783_020 0.0679527091 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
5 Hb_001489_080 0.0797488013 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_003376_250 0.0797948929 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
7 Hb_000436_130 0.0803447612 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
8 Hb_009339_030 0.0816423597 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
9 Hb_164010_030 0.0818867419 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
10 Hb_001390_130 0.0826129025 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
11 Hb_034380_020 0.0827534813 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
12 Hb_000603_080 0.082996188 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
13 Hb_003697_040 0.085937802 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
14 Hb_000982_080 0.0866626082 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
15 Hb_008566_030 0.0869238806 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
16 Hb_001352_020 0.0869769736 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
17 Hb_000406_130 0.0877564225 - - vesicle-associated membrane protein, putative [Ricinus communis]
18 Hb_000327_180 0.0909931249 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
19 Hb_003053_020 0.0916212399 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
20 Hb_000471_110 0.0916764018 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007416_060 Hb_007416_060 Hb_005488_200 Hb_005488_200 Hb_007416_060--Hb_005488_200 Hb_000116_260 Hb_000116_260 Hb_007416_060--Hb_000116_260 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_003376_250 Hb_003376_250 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130 Hb_000982_080 Hb_000982_080 Hb_005488_200--Hb_000982_080 Hb_005488_200--Hb_003376_250 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_000603_080 Hb_000603_080 Hb_005488_200--Hb_000603_080 Hb_003697_040 Hb_003697_040 Hb_005488_200--Hb_003697_040 Hb_001352_020 Hb_001352_020 Hb_000116_260--Hb_001352_020 Hb_000497_300 Hb_000497_300 Hb_000116_260--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000116_260--Hb_164010_030 Hb_000471_110 Hb_000471_110 Hb_000116_260--Hb_000471_110 Hb_000406_130 Hb_000406_130 Hb_000116_260--Hb_000406_130 Hb_000985_030 Hb_000985_030 Hb_000783_020--Hb_000985_030 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_000783_020--Hb_001489_080 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_000783_020--Hb_003697_040 Hb_001489_080--Hb_000985_030 Hb_004934_100 Hb_004934_100 Hb_001489_080--Hb_004934_100 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_002169_040 Hb_002169_040 Hb_001489_080--Hb_002169_040 Hb_003376_250--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_003376_250--Hb_011344_190 Hb_001195_200 Hb_001195_200 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180 Hb_009339_030 Hb_009339_030 Hb_000436_130--Hb_009339_030 Hb_010883_050 Hb_010883_050 Hb_000436_130--Hb_010883_050 Hb_000733_180 Hb_000733_180 Hb_000436_130--Hb_000733_180 Hb_000436_130--Hb_003697_040 Hb_001013_030 Hb_001013_030 Hb_000436_130--Hb_001013_030 Hb_000436_130--Hb_003053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02756 1.0938 1.30236 2.09915 1.09226 1.77915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00784 2.9378 3.91466 2.09636 2.62996

CAGE analysis