Hb_007416_080

Information

Type -
Description -
Location Contig7416: 46955-48849
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56412: 48583-48757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_080 0.0 - - -
2 Hb_048183_010 0.1629791154 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
3 Hb_000562_010 0.1731325812 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
4 Hb_158296_010 0.1869368395 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_133648_010 0.1974471569 - - -
6 Hb_000164_130 0.2061431104 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_001208_020 0.227915927 - - -
8 Hb_002984_030 0.2411020913 - - -
9 Hb_178711_010 0.2456673087 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
10 Hb_072290_010 0.2562226831 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
11 Hb_122741_010 0.2570982212 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
12 Hb_001248_180 0.2579770894 - - -
13 Hb_029622_070 0.2602161607 - - -
14 Hb_001916_010 0.2684047354 - - hypothetical protein VITISV_021527 [Vitis vinifera]
15 Hb_148658_010 0.2781756739 - - -
16 Hb_060585_010 0.2824556272 - - unnamed protein product [Coffea canephora]
17 Hb_001810_020 0.2827689484 - - -
18 Hb_116367_010 0.28277658 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
19 Hb_000244_140 0.2829012862 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
20 Hb_000092_050 0.2846795231 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_080 Hb_007416_080 Hb_048183_010 Hb_048183_010 Hb_007416_080--Hb_048183_010 Hb_000562_010 Hb_000562_010 Hb_007416_080--Hb_000562_010 Hb_158296_010 Hb_158296_010 Hb_007416_080--Hb_158296_010 Hb_133648_010 Hb_133648_010 Hb_007416_080--Hb_133648_010 Hb_000164_130 Hb_000164_130 Hb_007416_080--Hb_000164_130 Hb_001208_020 Hb_001208_020 Hb_007416_080--Hb_001208_020 Hb_048183_010--Hb_133648_010 Hb_072290_010 Hb_072290_010 Hb_048183_010--Hb_072290_010 Hb_001708_010 Hb_001708_010 Hb_048183_010--Hb_001708_010 Hb_178711_010 Hb_178711_010 Hb_048183_010--Hb_178711_010 Hb_048183_010--Hb_000164_130 Hb_000562_010--Hb_158296_010 Hb_000562_010--Hb_001208_020 Hb_001248_180 Hb_001248_180 Hb_000562_010--Hb_001248_180 Hb_000562_010--Hb_133648_010 Hb_000562_010--Hb_000164_130 Hb_158296_010--Hb_133648_010 Hb_158296_010--Hb_001208_020 Hb_158296_010--Hb_000164_130 Hb_000244_140 Hb_000244_140 Hb_158296_010--Hb_000244_140 Hb_097783_010 Hb_097783_010 Hb_133648_010--Hb_097783_010 Hb_133648_010--Hb_072290_010 Hb_000164_130--Hb_133648_010 Hb_000164_130--Hb_001208_020 Hb_053073_010 Hb_053073_010 Hb_001208_020--Hb_053073_010 Hb_005951_010 Hb_005951_010 Hb_001208_020--Hb_005951_010 Hb_000134_100 Hb_000134_100 Hb_001208_020--Hb_000134_100 Hb_003894_090 Hb_003894_090 Hb_001208_020--Hb_003894_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.204312 0.221874 1.10862 0 0.468541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0536991 0

CAGE analysis