Hb_007416_100

Information

Type -
Description -
Location Contig7416: 66677-70069
Sequence    

Annotation

kegg
ID rcu:RCOM_0919500
description transferase, transferring glycosyl groups, putative
nr
ID XP_012076358.1
description PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
swissprot
ID Q9SB75
description Probable xyloglucan glycosyltransferase 5 OS=Arabidopsis thaliana GN=CSLC5 PE=1 SV=1
trembl
ID B9RNP7
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0919500 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable xyloglucan glycosyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56416: 66339-70347 , PASA_asmbl_56417: 66445-70347
cDNA
(Sanger)
(ID:Location)		 031_P05.ab1: 66339-67030

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_100 0.0 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
2 Hb_020805_140 0.168219923 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
3 Hb_000300_480 0.1838042817 - - hypothetical protein RCOM_1321910 [Ricinus communis]
4 Hb_000210_100 0.1860894899 - - pepsin A, putative [Ricinus communis]
5 Hb_000107_350 0.1886898751 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
6 Hb_011310_040 0.1930331945 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
7 Hb_007925_010 0.1937544883 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
8 Hb_002498_030 0.195515124 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004055_020 0.1966057486 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
10 Hb_000345_080 0.2014348847 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
11 Hb_000496_110 0.2078642954 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
12 Hb_001635_010 0.2100664502 - - -
13 Hb_001004_080 0.2114927101 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
14 Hb_025466_020 0.2115071736 - - tubulin beta-6 [Brassica oleracea var. italica]
15 Hb_000246_130 0.2124656736 - - tubulin alpha chain, putative [Ricinus communis]
16 Hb_026527_010 0.2141569905 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
17 Hb_069355_010 0.2145832118 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
18 Hb_000291_290 0.2150885983 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008699_030 0.2175888533 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
20 Hb_001369_630 0.2176814671 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_007416_100 Hb_007416_100 Hb_020805_140 Hb_020805_140 Hb_007416_100--Hb_020805_140 Hb_000300_480 Hb_000300_480 Hb_007416_100--Hb_000300_480 Hb_000210_100 Hb_000210_100 Hb_007416_100--Hb_000210_100 Hb_000107_350 Hb_000107_350 Hb_007416_100--Hb_000107_350 Hb_011310_040 Hb_011310_040 Hb_007416_100--Hb_011310_040 Hb_007925_010 Hb_007925_010 Hb_007416_100--Hb_007925_010 Hb_026527_010 Hb_026527_010 Hb_020805_140--Hb_026527_010 Hb_020805_140--Hb_000107_350 Hb_069355_010 Hb_069355_010 Hb_020805_140--Hb_069355_010 Hb_025466_020 Hb_025466_020 Hb_020805_140--Hb_025466_020 Hb_000345_080 Hb_000345_080 Hb_020805_140--Hb_000345_080 Hb_008699_030 Hb_008699_030 Hb_020805_140--Hb_008699_030 Hb_009222_110 Hb_009222_110 Hb_000300_480--Hb_009222_110 Hb_000056_190 Hb_000056_190 Hb_000300_480--Hb_000056_190 Hb_006925_050 Hb_006925_050 Hb_000300_480--Hb_006925_050 Hb_001102_160 Hb_001102_160 Hb_000300_480--Hb_001102_160 Hb_000291_290 Hb_000291_290 Hb_000300_480--Hb_000291_290 Hb_000856_400 Hb_000856_400 Hb_000300_480--Hb_000856_400 Hb_001454_100 Hb_001454_100 Hb_000210_100--Hb_001454_100 Hb_000210_100--Hb_025466_020 Hb_000210_100--Hb_069355_010 Hb_000260_280 Hb_000260_280 Hb_000210_100--Hb_000260_280 Hb_003878_050 Hb_003878_050 Hb_000210_100--Hb_003878_050 Hb_000210_100--Hb_020805_140 Hb_000649_040 Hb_000649_040 Hb_000107_350--Hb_000649_040 Hb_000077_310 Hb_000077_310 Hb_000107_350--Hb_000077_310 Hb_000107_350--Hb_011310_040 Hb_000808_150 Hb_000808_150 Hb_000107_350--Hb_000808_150 Hb_003226_250 Hb_003226_250 Hb_000107_350--Hb_003226_250 Hb_004055_020 Hb_004055_020 Hb_000107_350--Hb_004055_020 Hb_002596_080 Hb_002596_080 Hb_011310_040--Hb_002596_080 Hb_000139_300 Hb_000139_300 Hb_011310_040--Hb_000139_300 Hb_002157_270 Hb_002157_270 Hb_011310_040--Hb_002157_270 Hb_011310_040--Hb_003226_250 Hb_002164_020 Hb_002164_020 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110 Hb_001289_020 Hb_001289_020 Hb_007925_010--Hb_001289_020 Hb_105959_010 Hb_105959_010 Hb_007925_010--Hb_105959_010 Hb_002316_080 Hb_002316_080 Hb_007925_010--Hb_002316_080 Hb_007925_010--Hb_069355_010 Hb_000246_130 Hb_000246_130 Hb_007925_010--Hb_000246_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44057 1.01572 10.666 40.9165 0.519011 1.50224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.363 3.03722 6.68028 0.845509 16.8265

CAGE analysis