Hb_007416_110

Information

Type -
Description -
Location Contig7416: 71847-76529
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03380g
description POPTRDRAFT_779207; cyclic nucleotide-regulated ion channel family protein
nr
ID XP_012076359.1
description PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
swissprot
ID Q9SJA4
description Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2
trembl
ID B9ILD6
description Cyclic nucleotide-regulated ion channel family protein OS=Populus trichocarpa GN=POPTR_0018s03380g PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable cyclic nucleotide-gated ion channel 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_110 0.0 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
2 Hb_000465_150 0.0791881039 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
3 Hb_002281_020 0.0949650044 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
4 Hb_000510_170 0.0958760026 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
5 Hb_003440_020 0.1016139601 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_002486_080 0.1026800432 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
7 Hb_000638_130 0.1089605747 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
8 Hb_005015_110 0.1095588803 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
9 Hb_000890_080 0.1128768118 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
10 Hb_005686_130 0.1129170711 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
11 Hb_001571_060 0.1144755244 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
12 Hb_180378_010 0.1155085374 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
13 Hb_000804_020 0.1161667672 - - PREDICTED: aconitate hydratase, cytoplasmic [Jatropha curcas]
14 Hb_000666_010 0.1165843528 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001277_050 0.1182408818 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
16 Hb_000358_020 0.1221928985 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
17 Hb_030736_040 0.1253924207 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
18 Hb_002534_130 0.1260421922 - - membrane associated ring finger 1,8, putative [Ricinus communis]
19 Hb_001623_190 0.1269467426 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
20 Hb_000035_350 0.127006488 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007416_110 Hb_007416_110 Hb_000465_150 Hb_000465_150 Hb_007416_110--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_007416_110--Hb_002281_020 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_003440_020 Hb_003440_020 Hb_007416_110--Hb_003440_020 Hb_002486_080 Hb_002486_080 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130 Hb_005015_110 Hb_005015_110 Hb_000465_150--Hb_005015_110 Hb_000465_150--Hb_002486_080 Hb_003025_030 Hb_003025_030 Hb_000465_150--Hb_003025_030 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_002281_020--Hb_003440_020 Hb_008375_010 Hb_008375_010 Hb_002281_020--Hb_008375_010 Hb_002281_020--Hb_002486_080 Hb_000585_110 Hb_000585_110 Hb_002281_020--Hb_000585_110 Hb_001301_280 Hb_001301_280 Hb_002281_020--Hb_001301_280 Hb_116349_120 Hb_116349_120 Hb_000510_170--Hb_116349_120 Hb_000510_170--Hb_000638_130 Hb_001141_240 Hb_001141_240 Hb_000510_170--Hb_001141_240 Hb_000979_130 Hb_000979_130 Hb_000510_170--Hb_000979_130 Hb_000666_010 Hb_000666_010 Hb_000510_170--Hb_000666_010 Hb_002445_030 Hb_002445_030 Hb_000510_170--Hb_002445_030 Hb_000358_020 Hb_000358_020 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_055690_010 Hb_055690_010 Hb_003440_020--Hb_055690_010 Hb_000890_080 Hb_000890_080 Hb_003440_020--Hb_000890_080 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_001571_060 Hb_001571_060 Hb_002486_080--Hb_001571_060 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_005686_130 Hb_005686_130 Hb_000638_130--Hb_005686_130 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.146258 0.320992 0.734883 0.593223 0.0734176 0.103461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.353489 0.23179 0.382146 0.693921 0.75371

CAGE analysis